1EWY - JenaLib

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Biological Unit 2 (Jmol Viewer)

Title :   ANABAENA PCC7119 FERREDOXIN:FERREDOXIN-NADP+-REDUCTASE COMPLEX

Authors :   R. Morales, M. H. Charon, M. Frey

Date :   28 Apr 00 (Deposition) - 07 Feb 01 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.38

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A,C  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Electron Transfer Complex, Photosynthesis, Protein-Protein Interaction, Ferredoxin, Reductase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. Morales, G. Kachalova, F. Vellieux, M. H. Charon, M. Frey
Crystallographic Studies Of The Interaction Between The Ferredoxin-Nadp+ Reductase And Ferredoxin From The Cyanobacterium Anabaena: Looking For The Elusive Ferredoxin Molecule.
Acta Crystallogr. , Sect. D V. 56 1408 2000
PubMed-ID: 11053838 | Reference-DOI: 10.1107/S0907444900010052
(for further references see the PDB file header)

Molecule 1 - FERREDOXIN-NADP REDUCTASE
	Chains	:	A, B
	EC Number	:	1.18.1.2
	Fragment	:	138-440
	Organism Scientific	:	NOSTOC SP. PCC 7119
	Organism Taxid	:	1168

Molecule 2 - FERREDOXIN I
	Chains	:	C
	Organism Scientific	:	NOSTOC SP. PCC 7119
	Organism Taxid	:	1168

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (1x)	:	A		C
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 3)

No.	Name	Count	Type	Full Name
1	FAD	2	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
2	FES	1	Ligand/Ion	FE2/S2 (INORGANIC) CLUSTER

Biological Unit 1 (2, 2)

No.	Name	Count	Type	Full Name
1	FAD	1	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
2	FES	1	Ligand/Ion	FE2/S2 (INORGANIC) CLUSTER

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	FAD	1	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
2	FES	-1	Ligand/Ion	FE2/S2 (INORGANIC) CLUSTER

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:77 , LEU A:78 , TYR A:79 , SER A:80 , CYS A:98 , VAL A:99 , ARG A:100 , LEU A:102 , TYR A:104 , PRO A:107 , GLY A:115 , VAL A:116 , CYS A:117 , SER A:118 , THR A:157 , GLU A:301 , TYR A:303 , HOH A:315 , HOH A:316 , FAD B:1304 , ALA C:45 , SER C:64	BINDING SITE FOR RESIDUE FAD A 304
2	AC2	SOFTWARE	FAD A:304 , ARG B:77 , LEU B:78 , TYR B:79 , SER B:80 , CYS B:98 , VAL B:99 , ARG B:100 , LEU B:102 , TYR B:104 , GLY B:115 , VAL B:116 , CYS B:117 , SER B:118 , THR B:157 , GLU B:301 , TYR B:303 , HOH B:1319 , HOH B:1329	BINDING SITE FOR RESIDUE FAD B 1304
3	AC3	SOFTWARE	SER C:40 , CYS C:41 , ARG C:42 , GLY C:44 , ALA C:45 , CYS C:46 , CYS C:49 , LEU C:77 , CYS C:79	BINDING SITE FOR RESIDUE FES C 99

(no "SS Bond" information available for 1EWY)

(no "Cis Peptide Bond" information available for 1EWY)

(no "SAP(SNP)/Variant" information available for 1EWY)

Asymmetric Unit (3, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	2FE2S_FER_2	PS51085	2Fe-2S ferredoxin-type iron-sulfur binding domain profile.	FER1_NOSSO	4-96	1	C:3-95
2	2FE2S_FER_1	PS00197	2Fe-2S ferredoxin-type iron-sulfur binding region signature.	FER1_NOSSO	42-50	1	C:41-49
3	FAD_FR	PS51384	Ferredoxin reductase-type FAD binding domain profile.	FENR_NOSSO	155-279	2	A:18-142 B:18-142

Biological Unit 1 (3, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	2FE2S_FER_2	PS51085	2Fe-2S ferredoxin-type iron-sulfur binding domain profile.	FER1_NOSSO	4-96	1	C:3-95
2	2FE2S_FER_1	PS00197	2Fe-2S ferredoxin-type iron-sulfur binding region signature.	FER1_NOSSO	42-50	1	C:41-49
3	FAD_FR	PS51384	Ferredoxin reductase-type FAD binding domain profile.	FENR_NOSSO	155-279	1	A:18-142 -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	2FE2S_FER_2	PS51085	2Fe-2S ferredoxin-type iron-sulfur binding domain profile.	FER1_NOSSO	4-96	0	-
2	2FE2S_FER_1	PS00197	2Fe-2S ferredoxin-type iron-sulfur binding region signature.	FER1_NOSSO	42-50	0	-
3	FAD_FR	PS51384	Ferredoxin reductase-type FAD binding domain profile.	FENR_NOSSO	155-279	1	- B:18-142

(no "Exon" information available for 1EWY)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:303
 aligned with FENR_NOSSO | P21890 from UniProtKB/Swiss-Prot  Length:440

    Alignment length:303
                                   147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437   
           FENR_NOSSO   138 TQAKAKHADVPVNLYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVDKNGKPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADELWQLIKNQKTHTYICGLRGMEEGIDAALSAAAAKEGVTWSDYQKDLKKAGRWHVETY 440
               SCOP domains d1ewya1 A:1-141 Ferredoxin reductase (flavodoxin reductase) N-terminal domain                                                                d1ewya2 A:142-303 Ferredoxin reductase (flavodoxin reductase)                                                                                                      SCOP domains
               CATH domains -1ewyA01 A:2-136 Translation factors                                                                                                    1ewyA02 A:137-303 Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module                                                                                   CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......................eeeeeee.........eeeeeee............eeeee.............eeee.............eeeeeee..eee......eeehhhhhhhhh.......eeeee.............eeeeeee...hhhhhhhhhhhhhhhhhhhh........eeeeeee.hhhhh.hhhhhhhhhhhh...eeeeeee....ee...ee.hhhhhhhhhhhhhhhhhh...eeeeeee...hhhhhhhhhhhhhhh...hhhhhhhhhh....eeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------FAD_FR  PDB: A:18-142 UniProt: 155-279                                                                                       ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ewy A   1 TQAKAKHADVPVNLYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVDKNGKPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADELWQLIKNQKTHTYICGLRGMEEGIDAALSAAAAKEGVTWSDYQKDLKKAGRWHVETY 303
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300

Chain B from PDB  Type:PROTEIN  Length:303
 aligned with FENR_NOSSO | P21890 from UniProtKB/Swiss-Prot  Length:440

    Alignment length:303
                                   147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437   
           FENR_NOSSO   138 TQAKAKHADVPVNLYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVDKNGKPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADELWQLIKNQKTHTYICGLRGMEEGIDAALSAAAAKEGVTWSDYQKDLKKAGRWHVETY 440
               SCOP domains d1ewyb1 B:1-141 Ferredoxin reductase (flavodoxin reductase) N-terminal domain                                                                d1ewyb2 B:142-303 Ferredoxin reductase (flavodoxin reductase)                                                                                                      SCOP domains
               CATH domains -1ewyB01 B:2-136 Translation factors                                                                                                    1ewyB02 B:137-303 Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module                                                                                   CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......................eee...ee.........eeeeeee............eeee..............eeee.............eeeeeee..eee......eeehhhhhhhhh.....ee..................eeeeeee...hhhhhhhhhh..hhhhhh..........eeeeeee.hhhhh.hhhhhhhhhhhh...eeeeeee............hhhhhhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhhhhh....hhhhhhhhhhhhh.eeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------FAD_FR  PDB: B:18-142 UniProt: 155-279                                                                                       ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ewy B   1 TQAKAKHADVPVNLYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVDKNGKPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADELWQLIKNQKTHTYICGLRGMEEGIDAALSAAAAKEGVTWSDYQKDLKKAGRWHVETY 303
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300

Chain C from PDB  Type:PROTEIN  Length:98
 aligned with FER1_NOSSO | P0A3C8 from UniProtKB/Swiss-Prot  Length:99

    Alignment length:98
                                    11        21        31        41        51        61        71        81        91        
           FER1_NOSSO     2 ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDLY  99
               SCOP domains d1ewyc_ C: 2Fe-2S ferredoxin                                                                       SCOP domains
               CATH domains 1ewyC00 C:1-98  [code=3.10.20.30, no name defined]                                                 CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee....eeeeeeee...hhhhhhhh.................eeee....ee.......hhhhhh..eee.hhhee.....ee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --2FE2S_FER_2  PDB: C:3-95 UniProt: 4-96                                                       --- PROSITE (1)
                PROSITE (2) ----------------------------------------2FE2S_FER------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 1ewy C   1 ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDLY  98
                                    10        20        30        40        50        60        70        80        90

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "Pfam Domain" information available for 1EWY)

Asymmetric Unit(hide GO term definitions)

Chain A,B (FENR_NOSSO | P21890)

molecular function
	GO:0050661	NADP binding	Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH.
	GO:0004324	ferredoxin-NADP+ reductase activity	Catalysis of the reaction: reduced ferredoxin + NADP+ = oxidized ferredoxin + NADPH + H+.
	GO:0050660	flavin adenine dinucleotide binding	Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0030089	phycobilisome	Any of the granules, approximately 32 nm x 48 nm and consisting of highly aggregated phycobiliproteins, that are attached in arrays to the external face of a thylakoid membrane in algae of the phyla Cyanophyta and Rhodophyta, where they function as light-harvesting devices in photosynthesis. Excitation energy in the phycobilisome flows in the sequence: phycoerythrin, phycocyanin, allophycocyanin before passing to the antenna chlorophyll of photosystem II.
	GO:0009579	thylakoid	A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation.
	GO:0042651	thylakoid membrane	The pigmented membrane of any thylakoid.

Chain C (FER1_NOSSO | P0A3C8)

molecular function
	GO:0051537	2 iron, 2 sulfur cluster binding	Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands.
	GO:0009055	electron carrier activity	Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
	GO:0051536	iron-sulfur cluster binding	Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0022900	electron transport chain	A process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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1qt9	1QT9 CONTAINS ANABAENA PCC7119 FERREDOXIN
1que	1QUE CONTAINS ANABAENA PCC7119 FERREDOXIN-NADP+-REDUCTASE

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