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(-) Description

Title :  CRYSTAL STRUCTURE OF YEAST PHENYLALANINE TRANSFER RNA AT 2.0 A RESOLUTION
 
Authors :  L. Jovine, S. Djordjevic, D. Rhodes
Date :  20 Apr 00  (Deposition) - 01 May 00  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Transfer Rna, Phenylalanine, Phe-Trna, Yeast, Amino-Acid Transport, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Jovine, S. Djordjevic, D. Rhodes
The Crystal Structure Of Yeast Phenylalanine Trna At 2. 0 A Resolution: Cleavage By Mg(2+) In 15-Year Old Crystals.
J. Mol. Biol. V. 301 401 2000
PubMed-ID: 10926517  |  Reference-DOI: 10.1006/JMBI.2000.3950
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PHENYLALANINE TRANSFER RNA
    Chains: A
    Organism Scientific: SACCHAROMYCES
    Organism Taxid: 4930

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (13, 25)

Asymmetric/Biological Unit (13, 25)
No.NameCountTypeFull Name
11MA1Mod. Nucleotide6-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE
22MG1Mod. Nucleotide2N-METHYLGUANOSINE-5'-MONOPHOSPHATE
35MC2Mod. Nucleotide5-METHYLCYTIDINE-5'-MONOPHOSPHATE
45MU1Mod. Nucleotide5-METHYLURIDINE 5'-MONOPHOSPHATE
57MG1Mod. Nucleotide7N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHATE
6H2U2Mod. Nucleotide5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
7M2G1Mod. NucleotideN2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE
8MG10Ligand/IonMAGNESIUM ION
9OMC1Mod. NucleotideO2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
10OMG1Mod. NucleotideO2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
11PSU2Mod. NucleotidePSEUDOURIDINE-5'-MONOPHOSPHATE
12SPM1Ligand/IonSPERMINE
13YG1Mod. ResidueWYBUTOSINE

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREU A:12 , HOH A:985 , HOH A:986 , HOH A:987 , HOH A:988BINDING SITE FOR RESIDUE MG A 901
02AC2SOFTWAREG A:20 , A A:21 , HOH A:1105 , HOH A:1114BINDING SITE FOR RESIDUE MG A 902
03AC3SOFTWAREG A:19 , HOH A:918 , HOH A:919 , HOH A:920 , HOH A:921 , HOH A:922BINDING SITE FOR RESIDUE MG A 903
04AC4SOFTWAREHOH A:936 , HOH A:937 , HOH A:938 , HOH A:939 , HOH A:940 , HOH A:941BINDING SITE FOR RESIDUE MG A 904
05AC5SOFTWARE2MG A:10 , C A:11 , HOH A:977 , HOH A:1034BINDING SITE FOR RESIDUE MG A 905
06AC6SOFTWAREA A:35 , A A:36BINDING SITE FOR RESIDUE MG A 906
07AC7SOFTWAREG A:43 , HOH A:971BINDING SITE FOR RESIDUE MG A 907
08AC8SOFTWAREG A:71 , C A:72BINDING SITE FOR RESIDUE MG A 908
09AC9SOFTWAREU A:52 , HOH A:1043 , HOH A:1062BINDING SITE FOR RESIDUE MG A 909
10BC1SOFTWAREA A:29 , G A:30BINDING SITE FOR RESIDUE MG A 910
11BC2SOFTWAREA A:14 , U A:52 , G A:53 , 5MU A:54 , PSU A:55 , G A:57 , 1MA A:58 , HOH A:1108BINDING SITE FOR RESIDUE SPM A 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1EVV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1EVV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1EVV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1EVV)

(-) Exons   (0, 0)

(no "Exon" information available for 1EVV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:RNA  Length:76
                                                                                                           
                  1evv A  1 GCGGAUUUAgCUCAGuuGGGAGAGCgCCAGAcUgAAgAucUGGAGgUCcUGUGuuCGaUCCACAGAAUUCGCACCA 76
                                    10     || 20     |  30 | |  | 40     |  50   ||  |60        70      
                                    10-2MG ||       26-M2G | |  | ||     |  |    55-PSU                 
                                          16-H2U          32-OMC| ||     |  |    |  58-1MA              
                                           17-H2U           34-OMG||     |  |    |                      
                                                               37-YG     |  |    |                      
                                                                 39-PSU  |  |    |                      
                                                                  40-5MC |  |    |                      
                                                                        46-7MG   |                      
                                                                           49-5MC|                      
                                                                                54-5MU
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1EVV)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1EVV)

(-) Gene Ontology  (0, 0)

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1tra 4tna