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(-) Description

Title :  STRUCTURE OF TREHALOSE MALTOSE BINDING PROTEIN FROM THERMOCOCCUS LITORALIS
 
Authors :  J. Diez, K. Diederichs, G. Greller, R. Horlacher, W. Boos, W. Welte
Date :  14 Apr 00  (Deposition) - 14 Mar 01  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Trehalose-Maltose Binding Protein, Protein-Carbohydrate Complex, Mbp 2 Fold, Abc Transporter Fold, Thermophilic Protein, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Diez, K. Diederichs, G. Greller, R. Horlacher, W. Boos, W. Welte
The Crystal Structure Of A Liganded Trehalose/Maltose-Binding Protein From The Hyperthermophilic Archaeon Thermococcus Litoralis At 1. 85 A.
J. Mol. Biol. V. 305 905 2001
PubMed-ID: 11162101  |  Reference-DOI: 10.1006/JMBI.2000.4203
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TREHALOSE/MALTOSE BINDING PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PRHO1000
    Expression System Taxid: 562
    Organism Scientific: THERMOCOCCUS LITORALIS
    Organism Taxid: 2265

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 9)

Asymmetric/Biological Unit (3, 9)
No.NameCountTypeFull Name
1CL5Ligand/IonCHLORIDE ION
2PT3Ligand/IonPLATINUM (II) ION
3TRE1Ligand/IonTREHALOSE

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREMET A:327 , CL A:412 , CL A:413 , CL A:414BINDING SITE FOR RESIDUE PT A 411
2AC2SOFTWAREMET A:327 , PT A:411 , CL A:414BINDING SITE FOR RESIDUE CL A 412
3AC3SOFTWARELYS A:323 , MET A:327 , ALA A:343 , PT A:411BINDING SITE FOR RESIDUE CL A 413
4AC4SOFTWARELYS A:347 , PT A:411 , CL A:412BINDING SITE FOR RESIDUE CL A 414
5AC5SOFTWAREMET A:245BINDING SITE FOR RESIDUE PT A 415
6AC6SOFTWAREHIS A:224 , CL A:561 , CL A:562BINDING SITE FOR RESIDUE PT A 560
7AC7SOFTWAREPT A:560BINDING SITE FOR RESIDUE CL A 561
8AC8SOFTWAREPT A:560BINDING SITE FOR RESIDUE CL A 562
9AC9SOFTWAREGLY A:13 , GLU A:17 , THR A:44 , THR A:46 , ARG A:49 , ASP A:70 , TYR A:121 , ASP A:123 , TYR A:177 , GLU A:178 , GLY A:179 , GLU A:239 , TRP A:257 , TYR A:259 , GLY A:293 , GLY A:294 , TRP A:295 , ARG A:364 , HOH A:564 , HOH A:567BINDING SITE FOR RESIDUE TRE A 563

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1EU8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1EU8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1EU8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1EU8)

(-) Exons   (0, 0)

(no "Exon" information available for 1EU8)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:407
 aligned with MALE_THELN | Q7LYW7 from UniProtKB/Swiss-Prot  Length:450

    Alignment length:410
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448
           MALE_THELN    39 TETSLQGKIVFAVGGAPNEIEYWKGVIAEFEKKYPGVTVELKRQATDTEQRRLDLVNALRGKSSDPDVFLMDVAWLGQFIASGWLEPLDDYVQKDNYDLSVFFQSVINLADKQGGKLYALPVYIDAGLLYYRKDLLEKYGYSKPPETWQELVEMAQKIQSGERETNPNFWGFVWQGKQYESLVCDFVEYVYSNGGSLGEFKDGKWVPTLNKPENVEALQFMVDLIHKYKISPPNTYTEMTEEPVRLMFQQGNAAFERNWPYAWGLHNADDSPVKGKVGVAPLPHFPGHKSAATLGGWHIGISKYSDNKALAWEFVKFVESYSVQKGFAMNLGWNPGRVDVYDDPAVVSKSPHLKELRAVFENAVPRPIVPYYPQLSEIIQKYVNSALAGKISPQEALDKAQKEAEELVKQ 448
               SCOP domains d1   eu8a_ A: D-maltodextrin-binding protein, MBP                                                                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains 1e   u8A01 A:2-123,A:293-360 Periplasmic binding protein-like II                                                             1eu8A02 A:124-292,A:361-408 Periplasmic binding protein-like II                                                                                                          1eu8A01 A:2-123,A:293-360 Periplasmic binding protein-like II       1eu8A02 A:124-292,A:361-408                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..---..eeeeee..hhhhhhhhhhhhhhhhhhh...eeeeee...hhhhhhhhhhhhhh.....eeeeeee..hhhhhhhh.....hhhhhhhhh.hhhh.hhhhhhhhhee..ee..eeeeeee.eeeeehhhhhhh.......hhhhhhhhhhhhhhhhh......eeee.....hhhhhhhhhhhhhh.....eeee..eeee...hhhhhhhhhhhhhhhhh....hhhhh...hhhhhhhhhhh..eeeeee.hhhhhhhh.........eeee.............eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1eu8 A   2 IE---EGKIVFAVGGAPNEIEYWKGVIAEFEKKYPGVTVELKRQATDTEQRRLDLVNALRGKSSDPDVFLMDVAWLGQFIASGWLEPLDDYVQKDNYDLSVFFQSVINLADKQGGKLYALPVYIDAGLLYYRKDLLEKYGYSKPPETWQELVEMAQKIQSGERETNPNFWGFVWQGKQYEGLVCDFVEYVYSNGGSLGEFKDGKWVPTLNKPENVEALQFMVDLIHKYKISPPNTYTEMTEEPVRLMFQQGNAAFERNWPYAWGLHNADDSPVKGKVGVAPLPHFPGHKSAATLGGWHIGISKYSDNKALAWEFVKFVESYSVQKGFAMNLGWNPGRVDVYDDPAVVSKSPHLKELRAVFENAVPRPIVPYYPQLSEIIQKYVNSALAGKISPQEALDKAQKEAEELVKQ 408
                             |   |   8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408
                             3   4                                                                                                                                                                                                                                                                                                                                                                                                                    


Chain A from PDB  Type:PROTEIN  Length:407
 aligned with O51923_PYRFU | O51923 from UniProtKB/TrEMBL  Length:450

    Alignment length:410
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448
         O51923_PYRFU    39 TETSLQGKIVFAVGGAPNEIEYWKGVIAEFEKKYPGVTVELKRQATDTEQRRLDLVNALRGKSSDPDVFLMDVAWLGQFIASGWLEPLDDYVQKDNYDLSVFFQSVINLADKQGGKLYALPVYIDAGLLYYRKDLLEKYGYSKPPETWQELVEMAQKIQSGERETNPNFWGFVWQGKQYEGLVCDFVEYVYSNGGSLGEFKDGKWVPTLNKPENVEALQFMVDLIHKYKISPPNTYTEMTEEPVRLMFQQGNAAFERNWPYAWGLHNADDSPVKGKVGVAPLPHFPGHKSAATLGGWHIGISKYSDNKALAWEFVKFVESYSVQKGFAMNLGWNPGRVDVYDDPAVVSKSPHLKELRAVFENAVPRPIVPYYPQLSEIIQKYVNSALAGKISPQEALDKAQKEAEELVKQ 448
               SCOP domains d1   eu8a_ A: D-maltodextrin-binding protein, MBP                                                                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains 1e   u8A01 A:2-123,A:293-360 Periplasmic binding protein-like II                                                             1eu8A02 A:124-292,A:361-408 Periplasmic binding protein-like II                                                                                                          1eu8A01 A:2-123,A:293-360 Periplasmic binding protein-like II       1eu8A02 A:124-292,A:361-408                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..---..eeeeee..hhhhhhhhhhhhhhhhhhh...eeeeee...hhhhhhhhhhhhhh.....eeeeeee..hhhhhhhh.....hhhhhhhhh.hhhh.hhhhhhhhhee..ee..eeeeeee.eeeeehhhhhhh.......hhhhhhhhhhhhhhhhh......eeee.....hhhhhhhhhhhhhh.....eeee..eeee...hhhhhhhhhhhhhhhhh....hhhhh...hhhhhhhhhhh..eeeeee.hhhhhhhh.........eeee.............eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1eu8 A   2 IE---EGKIVFAVGGAPNEIEYWKGVIAEFEKKYPGVTVELKRQATDTEQRRLDLVNALRGKSSDPDVFLMDVAWLGQFIASGWLEPLDDYVQKDNYDLSVFFQSVINLADKQGGKLYALPVYIDAGLLYYRKDLLEKYGYSKPPETWQELVEMAQKIQSGERETNPNFWGFVWQGKQYEGLVCDFVEYVYSNGGSLGEFKDGKWVPTLNKPENVEALQFMVDLIHKYKISPPNTYTEMTEEPVRLMFQQGNAAFERNWPYAWGLHNADDSPVKGKVGVAPLPHFPGHKSAATLGGWHIGISKYSDNKALAWEFVKFVESYSVQKGFAMNLGWNPGRVDVYDDPAVVSKSPHLKELRAVFENAVPRPIVPYYPQLSEIIQKYVNSALAGKISPQEALDKAQKEAEELVKQ 408
                             |   |   8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408
                             3   4
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1EU8)

(-) Gene Ontology  (5, 7)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (O51923_PYRFU | O51923)
molecular function
    GO:0005215    transporter activity    Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
biological process
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.

Chain A   (MALE_THELN | Q7LYW7)
molecular function
    GO:0005215    transporter activity    Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
biological process
    GO:0008643    carbohydrate transport    The directed movement of carbohydrate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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  1eu8
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  O51923_PYRFU | O51923
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

1omp E.COLI MBP
3mbp E.COLI MBP + MALTOTRIOSE