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(-) Description

Title :  SOLUTION STRUCTURE OF FRAGMENT (350-370) OF THE TRANSMEMBRANE DOMAIN OF HEPATITIS C ENVELOPE GLYCOPROTEIN E1
 
Authors :  A. Op De Beeck, R. Montserret, S. Duvet, L. Cocquerel, R. Cacan, B. Barberot, M. Le Maire, F. Penin, J. Dubuisson
Date :  20 Mar 00  (Deposition) - 05 Apr 00  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A
Keywords :  Peptide, Transmembrane Domain, Envelope Protein E1, Hepatitis C Virus, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Op De Beeck, R. Montserret, S. Duvet, L. Cocquerel, R. Cacan, B. Barberot, M. Le Maire, F. Penin, J. Dubuisson
The Transmembrane Domains Of Hepatitis C Virus Envelope Glycoproteins E1 And E2 Play A Major Role In Heterodimerization.
J. Biol. Chem. V. 275 31428 2000
PubMed-ID: 10807921  |  Reference-DOI: 10.1074/JBC.M003003200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ENVELOPE GLYCOPROTEIN E1
    Chains: A
    Engineered: YES
    Fragment: TRANSMEMBRANE DOMAIN (RESIDUES 350-370)
    Other Details: THIS PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE OF THIS PEPTIDE IS NATURALLY FOUND IN HEPATITIS C VIRUS.
    Synthetic: YES

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NMR Structure : 

Summary Information (see also Sequences/Alignments below)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:PROTEIN  Length:21
 aligned with Q9Q3N3_9HEPC | Q9Q3N3 from UniProtKB/TrEMBL  Length:82

    Alignment length:21
                                    31        41 
          Q9Q3N3_9HEPC   22 GAHWGVLAGIAYFSMVGNWAK 42
               SCOP domains d1emza_ A:            SCOP domains
               CATH domains --------------------- CATH domains
               Pfam domains --------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------- SAPs(SNPs)
                    PROSITE --------------------- PROSITE
                 Transcript --------------------- Transcript
                  1emz A  1 GAHWGVLAGIAYFSMVGNWAK 21
                                    10        20
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Peptides (792)

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(-) Gene Ontology  (1, 1)

NMR Structure(hide GO term definitions)
Chain A   (Q9Q3N3_9HEPC | Q9Q3N3)
cellular component
    GO:0019031    viral envelope    The lipid bilayer of a virion that surrounds the protein capsid. May also contain glycoproteins.

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