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(-) Description

Title :  STRUCTURE OF BACTERIOPHAGE T4 GENE PRODUCT 11, THE INTERFACE BETWEEN THE BASEPLATE AND SHORT TAIL FIBERS
 
Authors :  P. G. Leiman, V. A. Kostyuchenko, M. M. Schneider, L. P. Kurochkina, V. V. Mesyanzhinov, M. G. Rossmann
Date :  13 Mar 00  (Deposition) - 05 Apr 00  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Beta Annulus, Coiled Coil, A Fiber Attachment Protein, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. G. Leiman, V. A. Kostyuchenko, M. M. Shneider, L. P. Kurochkina, V. V. Mesyanzhinov, M. G. Rossmann
Structure Of Bacteriophage T4 Gene Product 11, The Interface Between The Baseplate And Short Tail Fibers.
J. Mol. Biol. V. 301 975 2000
PubMed-ID: 10966799  |  Reference-DOI: 10.1006/JMBI.2000.3989
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - BASEPLATE STRUCTURAL PROTEIN GP11
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET-22B(+)
    Expression System Strain: BL21 DE3
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: ENTEROBACTERIA PHAGE T4
    Organism Taxid: 10665

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1EL6)

(-) Sites  (0, 0)

(no "Site" information available for 1EL6)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1EL6)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1EL6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1EL6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1EL6)

(-) Exons   (0, 0)

(no "Exon" information available for 1EL6)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:208
 aligned with BP11_BPT4 | P10929 from UniProtKB/Swiss-Prot  Length:219

    Alignment length:208
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211        
            BP11_BPT4    12 SRLADFLGFRPKTGDIDVMNRQSVGSVTISQLAKGFYEPNIESAINDVHNFSIKDVGTIITNKTGVSPEGVSQTDYWAFSGTVTDDSLPPGSPITVLVFGLPVSATTGMTAIEFVAKVRVALQEAIASFTAINSYKDHPTDGSKLEVTYLDNQKHVLSTYSTYGITISQEIISESKPGYGTWNLLGAQTVTLDNQQTPTVFYHFERTA 219
               SCOP domains d1el6a_ A: Baseplate structural protein gp11                                                                                                                                                                     SCOP domains
               CATH domains 1el6A01 A:12-63  [code=1.10.286.30, no name defined]1el6A02          1el6A03 A:81-189  [code=3.90.1160.10, no name defined]                                                       1el6A02 A:64-80,A:190-219      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh....................hhhhhh......hhhhhhhhhhhhhh.....eeee...........eeeeeeee...........eeeeee..eeeeee...hhhhhhhhhhhhhhhhhhh...eeeeee......eeeeee..........eee..eeeeeeeee........eeeeeeeee........eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1el6 A  12 SRLADFLGFRPKTGDIDVMNRQSVGSVTISQLAKGFYEPNIESAINDVHNFSIKDVGTIITNKTGVSPEGVSQTDYWAFSGTVTDDSLPPGSPITVLVFGLPVSATTGMTAIEFVAKVRVALQEAIASFTAINSYKDHPTDGSKLEVTYLDNQKHVLSTYSTYGITISQEIISESKPGYGTWNLLGAQTVTLDNQQTPTVFYHFERTA 219
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211        


Chain B from PDB  Type:PROTEIN  Length:208
 aligned with BP11_BPT4 | P10929 from UniProtKB/Swiss-Prot  Length:219

    Alignment length:208
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211        
            BP11_BPT4    12 SRLADFLGFRPKTGDIDVMNRQSVGSVTISQLAKGFYEPNIESAINDVHNFSIKDVGTIITNKTGVSPEGVSQTDYWAFSGTVTDDSLPPGSPITVLVFGLPVSATTGMTAIEFVAKVRVALQEAIASFTAINSYKDHPTDGSKLEVTYLDNQKHVLSTYSTYGITISQEIISESKPGYGTWNLLGAQTVTLDNQQTPTVFYHFERTA 219
               SCOP domains d1el6b_ B: Baseplate structural protein gp11                                                                                                                                                                     SCOP domains
               CATH domains 1el6B01 B:12-63  [code=1.10.286.30, no name defined]1el6B02          1el6B03 B:81-189  [code=3.90.1160.10, no name defined]                                                       1el6B02 B:64-80,B:190-219      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh....................hhhhhh......hhhhhhhhhhhhhh.....eeee...........eeeeeeee...........eeeeee..eeeeee...hhhhhhhhhhhhhhhhhhh...eeeeee......eeeeee..........eee..eeeeeeeee.......eeeeeeeeeee......eeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1el6 B  12 SRLADFLGFRPKTGDIDVMNRQSVGSVTISQLAKGFYEPNIESAINDVHNFSIKDVGTIITNKTGVSPEGVSQTDYWAFSGTVTDDSLPPGSPITVLVFGLPVSATTGMTAIEFVAKVRVALQEAIASFTAINSYKDHPTDGSKLEVTYLDNQKHVLSTYSTYGITISQEIISESKPGYGTWNLLGAQTVTLDNQQTPTVFYHFERTA 219
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211        


Chain C from PDB  Type:PROTEIN  Length:208
 aligned with BP11_BPT4 | P10929 from UniProtKB/Swiss-Prot  Length:219

    Alignment length:208
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211        
            BP11_BPT4    12 SRLADFLGFRPKTGDIDVMNRQSVGSVTISQLAKGFYEPNIESAINDVHNFSIKDVGTIITNKTGVSPEGVSQTDYWAFSGTVTDDSLPPGSPITVLVFGLPVSATTGMTAIEFVAKVRVALQEAIASFTAINSYKDHPTDGSKLEVTYLDNQKHVLSTYSTYGITISQEIISESKPGYGTWNLLGAQTVTLDNQQTPTVFYHFERTA 219
               SCOP domains d1el6c_ C: Baseplate structural protein gp11                                                                                                                                                                     SCOP domains
               CATH domains 1el6C01 C:12-63  [code=1.10.286.30, no name defined]1el6C02          1el6C03 C:81-189  [code=3.90.1160.10, no name defined]                                                       1el6C02 C:64-80,C:190-219      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh....................hhhhhh......hhhhhhhhhhhhhh.....eeee...........eeeeeee............eeeeee..eeeeee...hhhhhhhhhhhhhhhhhhh...eeeeee......eeeeee..........eee..eeeeeeeee.......eeeeeeeeee........eeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1el6 C  12 SRLADFLGFRPKTGDIDVMNRQSVGSVTISQLAKGFYEPNIESAINDVHNFSIKDVGTIITNKTGVSPEGVSQTDYWAFSGTVTDDSLPPGSPITVLVFGLPVSATTGMTAIEFVAKVRVALQEAIASFTAINSYKDHPTDGSKLEVTYLDNQKHVLSTYSTYGITISQEIISESKPGYGTWNLLGAQTVTLDNQQTPTVFYHFERTA 219
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (3, 9)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1EL6)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C   (BP11_BPT4 | P10929)
biological process
    GO:0019076    viral release from host cell    The dissemination of mature viral particles from the host cell, e.g. by cell lysis or the budding of virus particles from the cell membrane.
cellular component
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        BP11_BPT4 | P10929: 1pdf 1tja 5iv5 5iv7

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