1EGZ - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   CELLULASE CEL5 FROM ERWINIA CHRYSANTHEMI, A FAMILY GH 5-2 ENZYME

Authors :   M. Czjzek, M. El Hassouni, B. Py, F. Barras

Date :   18 Mar 99 (Deposition) - 26 Mar 99 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)

Keywords :   Glycosyl Hydrolase; Clan Gh-A; Family 5-2; Cellulase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Chapon, M. Czjzek, M. El Hassouni, B. Py, M. Juy, F. Barras
Type Ii Protein Secretion In Gram-Negative Pathogenic Bacteria: The Study Of The Structure/Secretion Relationships Of The Cellulase Cel5 (Formerly Egz) From Erwinia Chrysanthemi
J. Mol. Biol. V. 310 1055 2001
PubMed-ID: 11501995 | Reference-DOI: 10.1006/JMBI.2001.4787
(for further references see the PDB file header)

Molecule 1 - ENDOGLUCANASE Z
	Cellular Location	:	EXTERIOR
	Chains	:	A, B, C
	EC Number	:	3.2.1.4
	Fragment	:	CATALYTIC DOMAIN
	Organism Scientific	:	ERWINIA CHRYSANTHEMI
	Organism Taxid	:	556
	Other Details	:	THREE COPIES IN THE ASYMMETRIC UNIT
	Other Details - Source	:	GENE: CELZ
	Secretion	:	TYPE II
	Synonym	:	EGZ, CEL5

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 3)

No.	Name	Count	Type	Full Name
1	CA	3	Ligand/Ion	CALCIUM ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION

Biological Unit 3 (0, 0)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY A:121 , ASP A:158 , ASP A:160 , ASN A:161 , HOH A:1348 , HOH A:1401	BINDING SITE FOR RESIDUE CA A 300
2	AC2	SOFTWARE	GLY B:121 , ASP B:158 , ASP B:160 , ASN B:161 , HOH B:2336	BINDING SITE FOR RESIDUE CA B 300
3	AC3	SOFTWARE	GLY C:121 , ASP C:158 , ASP C:160 , ASN C:161 , HOH C:3345 , HOH C:3383	BINDING SITE FOR RESIDUE CA C 300
4	CTA	AUTHOR	GLU A:133 , GLU A:220	GLU133 IS THE NUCLEOPHILE AND GLU220 THE ACID/BASE AT THE CATALYTIC SITE OF THIS GLYCOSYL HYDROLASE
5	CTB	AUTHOR	GLU B:133 , GLU B:220	GLU133 IS THE NUCLEOPHILE AND GLU220 THE ACID/BASE AT THE CATALYTIC SITE OF THIS GLYCOSYL HYDROLASE
6	CTC	AUTHOR	GLU C:133 , GLU C:220	GLU133 IS THE NUCLEOPHILE AND GLU220 THE ACID/BASE AT THE CATALYTIC SITE OF THIS GLYCOSYL HYDROLASE

(no "SS Bond" information available for 1EGZ)

Asymmetric Unit

No.	Residues
1	Trp A:254	-	Ala A:255
2	Trp B:254	-	Ala B:255
3	Trp C:254	-	Ala C:255

(no "SAP(SNP)/Variant" information available for 1EGZ)

Asymmetric Unit (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GLYCOSYL_HYDROL_F5	PS00659	Glycosyl hydrolases family 5 signature.	GUNZ_DICD3	169-178	3	A:126-135 B:126-135 C:126-135

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GLYCOSYL_HYDROL_F5	PS00659	Glycosyl hydrolases family 5 signature.	GUNZ_DICD3	169-178	1	A:126-135 - -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GLYCOSYL_HYDROL_F5	PS00659	Glycosyl hydrolases family 5 signature.	GUNZ_DICD3	169-178	1	- B:126-135 -

Biological Unit 3 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GLYCOSYL_HYDROL_F5	PS00659	Glycosyl hydrolases family 5 signature.	GUNZ_DICD3	169-178	1	- - C:126-135

(no "Exon" information available for 1EGZ)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:291
 aligned with GUNZ_DICD3 | P07103 from UniProtKB/Swiss-Prot  Length:426

    Alignment length:291
                                    53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333 
           GUNZ_DICD3    44 SVEPLSVNGNKIYAGEKAKSFAGNSLFWSNNGWGGEKFYTADTVASLKKDWKSSIVRAAMGVQESGGYLQDPAGNKAKVERVVDAAIANDMYAIIGWHSHSAENNRSEAIRFFQEMARKYGNKPNVIYEIYNEPLQVSWSNTIKPYAEAVISAIRAIDPDNLIIVGTPSWSQNVDEASRDPINAKNIAYTLHFYAGTHGESLRNKARQALNNGIALFVTEWGTVNADGNGGVNQTETDAWVTFMRDNNISNANWALNDKNEGASTYYPDSKNLTESGKKVKSIIQSWPYKA 334
               SCOP domains d1egza_ A: Endoglucanase Cel5a                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains 1egzA00 A:1-291 Glycosidases                                                                                                                                                                                                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee..eeee.......eeee.........hhhh..hhhhhhhhh.....eeeeeee..........hhhhhhhhhhhhhhhhh...eeeeeee...hhhhhhhhhhhhhhhhhhh.....eeee.............hhhhhhhhhhhhhhh.....eee..hhhh..hhhhhhh......eee..eee.....hhhhhhhhhhhh........eee...........hhhhhhhhhhhhh....eee.....................hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------GLYCOSYL_H------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1egz A   1 SVEPLSVNGNKIYAGEKAKSFAGNSLFWSNNGWGGEKFYTADTVASLKKDWKSSIVRAAMGVQESGGYLQDPAGNKAKVERVVDAAIANDMYAIIGWHSHSAENNRSEAIRFFQEMARKYGNKPNVIYEIYNEPLQVSWSNTIKPYAEAVISAIRAIDPDNLIIVGTPSWSQNVDEASRDPINAKNIAYTLHFYAGTHGESLRNKARQALNNGIALFVTEWGTVNADGNGGVNQTETDAWVTFMRDNNISNANWALNDKNEGASTYYPDSKNLTESGKKVKSIIQSWPYKA 291
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290

Chain B from PDB  Type:PROTEIN  Length:291
 aligned with GUNZ_DICD3 | P07103 from UniProtKB/Swiss-Prot  Length:426

    Alignment length:291
                                    53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333 
           GUNZ_DICD3    44 SVEPLSVNGNKIYAGEKAKSFAGNSLFWSNNGWGGEKFYTADTVASLKKDWKSSIVRAAMGVQESGGYLQDPAGNKAKVERVVDAAIANDMYAIIGWHSHSAENNRSEAIRFFQEMARKYGNKPNVIYEIYNEPLQVSWSNTIKPYAEAVISAIRAIDPDNLIIVGTPSWSQNVDEASRDPINAKNIAYTLHFYAGTHGESLRNKARQALNNGIALFVTEWGTVNADGNGGVNQTETDAWVTFMRDNNISNANWALNDKNEGASTYYPDSKNLTESGKKVKSIIQSWPYKA 334
               SCOP domains d1egzb_ B: Endoglucanase Cel5a                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains 1egzB00 B:1-291 Glycosidases                                                                                                                                                                                                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee..eeee.......eeee.........hhhh..hhhhhhhhh.....eeeeeee..........hhhhhhhhhhhhhhhhh...eeeeeee...hhh.hhhhhhhhhhhhhhh.....eeee.............hhhhhhhhhhhhhhh.....eee..hhhh..hhhhhh.......eee..eee.....hhhhhhhhhhhhh.......eee...........hhhhhhhhhhhhh....eee.....................hhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------GLYCOSYL_H------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1egz B   1 SVEPLSVNGNKIYAGEKAKSFAGNSLFWSNNGWGGEKFYTADTVASLKKDWKSSIVRAAMGVQESGGYLQDPAGNKAKVERVVDAAIANDMYAIIGWHSHSAENNRSEAIRFFQEMARKYGNKPNVIYEIYNEPLQVSWSNTIKPYAEAVISAIRAIDPDNLIIVGTPSWSQNVDEASRDPINAKNIAYTLHFYAGTHGESLRNKARQALNNGIALFVTEWGTVNADGNGGVNQTETDAWVTFMRDNNISNANWALNDKNEGASTYYPDSKNLTESGKKVKSIIQSWPYKA 291
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290

Chain C from PDB  Type:PROTEIN  Length:291
 aligned with GUNZ_DICD3 | P07103 from UniProtKB/Swiss-Prot  Length:426

    Alignment length:291
                                    53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333 
           GUNZ_DICD3    44 SVEPLSVNGNKIYAGEKAKSFAGNSLFWSNNGWGGEKFYTADTVASLKKDWKSSIVRAAMGVQESGGYLQDPAGNKAKVERVVDAAIANDMYAIIGWHSHSAENNRSEAIRFFQEMARKYGNKPNVIYEIYNEPLQVSWSNTIKPYAEAVISAIRAIDPDNLIIVGTPSWSQNVDEASRDPINAKNIAYTLHFYAGTHGESLRNKARQALNNGIALFVTEWGTVNADGNGGVNQTETDAWVTFMRDNNISNANWALNDKNEGASTYYPDSKNLTESGKKVKSIIQSWPYKA 334
               SCOP domains d1egzc_ C: Endoglucanase Cel5a                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains 1egzC00 C:1-291 Glycosidases                                                                                                                                                                                                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee..eeee.......eeee.........hhhh..hhhhhhhhh.....eeeeeee..........hhhhhhhhhhhhhhhhh...eeeeeee...hhhhhhhhhhhhhhhhhhh.....eeee.............hhhhhhhhhhhhh.......eee..hhhh..hhhhhhh......eee..eee.....hhhhhhhhhhhh........eee...........hhhhhhhhhhhhh....eee.....................hhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------GLYCOSYL_H------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1egz C   1 SVEPLSVNGNKIYAGEKAKSFAGNSLFWSNNGWGGEKFYTADTVASLKKDWKSSIVRAAMGVQESGGYLQDPAGNKAKVERVVDAAIANDMYAIIGWHSHSAENNRSEAIRFFQEMARKYGNKPNVIYEIYNEPLQVSWSNTIKPYAEAVISAIRAIDPDNLIIVGTPSWSQNVDEASRDPINAKNIAYTLHFYAGTHGESLRNKARQALNNGIALFVTEWGTVNADGNGGVNQTETDAWVTFMRDNNISNANWALNDKNEGASTYYPDSKNLTESGKKVKSIIQSWPYKA 291
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: TIM beta/alpha-barrel (3956)

Superfamily: (Trans)glycosidases (1191)

Family: beta-glycanases (284)

Protein domain: Endoglucanase Cel5a (23)

Erwinia chrysanthemi [TaxId: 556] (1)

1a	d1egza_	A:
1b	d1egzb_	B:
1c	d1egzc_	C:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Alpha-Beta Barrel (2994)

Topology: TIM Barrel (2806)

Homologous Superfamily: Glycosidases (843)

Erwinia chrysanthemi. Organism_taxid: 556. (2)

1a	1egzA00	A:1-291
1b	1egzB00	B:1-291
1c	1egzC00	C:1-291

(no "Pfam Domain" information available for 1EGZ)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C (GUNZ_DICD3 | P07103)

molecular function
	GO:0030246	carbohydrate binding	Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
	GO:0008810	cellulase activity	Catalysis of the endohydrolysis of (1->4)-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0016798	hydrolase activity, acting on glycosyl bonds	Catalysis of the hydrolysis of any glycosyl bond.
	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	Catalysis of the hydrolysis of any O-glycosyl bond.
biological process
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0030245	cellulose catabolic process	The chemical reactions and pathways resulting in the breakdown of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0000272	polysaccharide catabolic process	The chemical reactions and pathways resulting in the breakdown of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

Asymmetric Unit
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	Cis Peptide Bonds
		Trp A:254 - Ala A:255	[ RasMol ]
		Trp B:254 - Ala B:255	[ RasMol ]
		Trp C:254 - Ala C:255	[ RasMol ]

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	1egz
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(no "Related Entries Specified in the PDB File" available for 1EGZ)

Description

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Ligands, Modified Residues, Ions (1, 3)

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SS Bonds (0, 0)

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