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(-) Description

Title :  THE 1.7 A CRYSTAL STRUCTURE OF A BLEOMYCIN RESISTANCE DETERMINANT ENCODED ON THE TRANSPOSON TN5
 
Authors :  M. Maruyama, Y. Matoba, T. Kumagai, M. Sugiyama
Date :  25 Jan 00  (Deposition) - 02 May 01  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Arm-Exchange, Antibiotic Inhibitor (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Maruyama, T. Kumagai, Y. Matoba, M. Hayashida, T. Fujii, Y. Hata, M. Sugiyama
Crystal Structures Of The Transposon Tn5-Carried Bleomycin Resistance Determinant Uncomplexed And Complexed With Bleomycin.
J. Biol. Chem. V. 276 9992 2001
PubMed-ID: 11134052  |  Reference-DOI: 10.1074/JBC.M009874200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - BLEOMYCIN RESISTANCE PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PKKTRP
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TRANSPOSON TN5
    Organism Scientific: KLEBSIELLA PNEUMONIAE
    Organism Taxid: 573

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION
2PG42Ligand/IonTETRAETHYLENE GLYCOL

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:22 , HOH A:391 , HOH A:392 , GLU B:222BINDING SITE FOR RESIDUE CA A 390
2AC2SOFTWARETRP A:35 , ARG B:265 , MET B:303 , GLU B:320BINDING SITE FOR RESIDUE PG4 B 380
3AC3SOFTWAREARG A:65 , TRP A:99 , ARG A:115 , TRP B:235 , ILE B:237BINDING SITE FOR RESIDUE PG4 A 381

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1ECS)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Tyr A:88 -Pro A:89
2Tyr B:288 -Pro B:289

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1ECS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1ECS)

(-) Exons   (0, 0)

(no "Exon" information available for 1ECS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:120
 aligned with BLE_KLEPN | P13081 from UniProtKB/Swiss-Prot  Length:126

    Alignment length:120
                                    11        21        31        41        51        61        71        81        91       101       111       121
            BLE_KLEPN     2 TDQATPNLPSRDFDSTAAFYERLGFGIVFRDAGWMILQRGDLMLEFFAHPGLDPLASWFSCCLRLDDLAEFYRQCKSVGIQETSSGYPRIHAPELQEWGGTMAALVDPDGTLLRLIQNEL 121
               SCOP domains d1ecsa_ A: Bleomycin resistance protein, BRP                                                                             SCOP domains
               CATH domains 1ecsA00 A:2-121 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeee.hhhhhhhhhhh...eeeee...eeeeee..eeeeeee....hhhhh..eeeeee.hhhhhhhhhhhh..........eeeeeee.....eeeeee.....eeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ecs A   2 TDQATPNLPSRDFDSTAAFYERLGFGIVFRDAGWMILQRGDLMLEFFAHPGLDPLASWFSCCLRLDDLAEFYRQCKSVGIQETSSGYPRIHAPELQGWGGTMAALVDPDGTLLRLIQNEL 121
                                    11        21        31        41        51        61        71        81        91       101       111       121


Chain B from PDB  Type:PROTEIN  Length:120
 aligned with BLE_KLEPN | P13081 from UniProtKB/Swiss-Prot  Length:126

    Alignment length:120
                                    11        21        31        41        51        61        71        81        91       101       111       121
            BLE_KLEPN     2 TDQATPNLPSRDFDSTAAFYERLGFGIVFRDAGWMILQRGDLMLEFFAHPGLDPLASWFSCCLRLDDLAEFYRQCKSVGIQETSSGYPRIHAPELQEWGGTMAALVDPDGTLLRLIQNEL 121
               SCOP domains d1ecsb_ B: Bleomycin resistance protein, BRP                                                                             SCOP domains
               CATH domains 1ecsB00 B:202-321 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeee.hhhhhhhhhhh...eeeee...eeeeee..eeeeeee....hhhhh..eeeeee.hhhhhhhhhhhh..........eeeeeee.....eeeeee.....eeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ecs B 202 TDQATPNLPSRDFDSTAAFYERLGFGIVFRDAGWMILQRGDLMLEFFAHPGLDPLASWFSCCLRLDDLAEFYRQCKSVGIQETSSGYPRIHAPELQGWGGTMAALVDPDGTLLRLIQNEL 321
                                   211       221       231       241       251       261       271       281       291       301       311       321
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1ECS)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (BLE_KLEPN | P13081)
molecular function
    GO:0008144    drug binding    Interacting selectively and non-covalently with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease.
biological process
    GO:0046677    response to antibiotic    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BLE_KLEPN | P13081: 1ewj 1mh6 1niq

(-) Related Entries Specified in the PDB File

1ewj