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(-) Description

Title :  SOLUTION STRUCTURE OF THE MOUSE DEFENSIN MBD-8
 
Authors :  F. Bauer, K. Schweimer, E. Kluver, K. Adermann, W. G. Forssmann, P. Roesch, H. Sticht
Date :  12 Jul 00  (Deposition) - 12 Jul 01  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Defensin, Mouse, Nmr Structure (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Bauer, K. Schweimer, E. Kluver, J. Conejo-Garcia, W. G. Forssmann, P. Roesch, K. Adermann, H. Sticht
Structure Determination Of Human And Murine Beta- Defensins Reveals Structural Conservation In The Absence Of Significant Sequence Similarity
Protein Sci. V. 10 2470 2001
PubMed-ID: 11714914  |  Reference-DOI: 10.1110/PS.PS.24401

(-) Compounds

Molecule 1 - BETA-DEFENSIN 8
    Cellular Location: EXTRACELLULAR
    Chains: A
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: MBD-8
    Synthetic: YES

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1E4R)

(-) Sites  (0, 0)

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(-) SS Bonds  (3, 3)

NMR Structure
No.Residues
1A:6 -A:33
2A:13 -A:27
3A:17 -A:34

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1E4R)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:35
 aligned with DEFB8_MOUSE | Q91V82 from UniProtKB/Swiss-Prot  Length:60

    Alignment length:35
                                    35        45        55     
           DEFB8_MOUSE   26 NEPVSCIRNGGICQYRCIGLRHKIGTCGSPFKCCK 60
               SCOP domains d1e4ra_ A: Beta-defensin, BD        SCOP domains
               CATH domains ----------------------------------- CATH domains
               Pfam domains ----------------------------------- Pfam domains
         Sec.struct. author ....hhhhhh.eee.......eeeee.....eee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------- PROSITE
                 Transcript ----------------------------------- Transcript
                  1e4r A  1 NEPVSCIRNGGICQYRCIGLRHKIGTCGSPFKCCK 35
                                    10        20        30
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Small proteins (3458)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1E4R)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (3, 3)

NMR Structure(hide GO term definitions)
Chain A   (DEFB8_MOUSE | Q91V82)
biological process
    GO:0006952    defense response    Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
    GO:0042742    defense response to bacterium    Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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