1DT9 - JenaLib

Asymmetric/Biological Unit (10, 10)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1a	ENST00000360541	1a	ENSE00002085161	chr5:137878989-137878786	204	ERF1_HUMAN	-	0	0	-	-
1.2a	ENST00000360541	2a	ENSE00002162727	chr5:137878625-137878522	104	ERF1_HUMAN	1-29	29	1	A:5-29	25
1.5	ENST00000360541	5	ENSE00000764447	chr5:137854556-137854381	176	ERF1_HUMAN	29-88	60	1	A:29-88	60
1.6a	ENST00000360541	6a	ENSE00001129292	chr5:137853389-137853250	140	ERF1_HUMAN	88-134	47	1	A:88-134	47
1.7b	ENST00000360541	7b	ENSE00001129287	chr5:137849395-137849257	139	ERF1_HUMAN	135-181	47	1	A:135-181	47
1.8a	ENST00000360541	8a	ENSE00001129281	chr5:137848643-137848453	191	ERF1_HUMAN	181-244	64	1	A:181-244	64
1.9b	ENST00000360541	9b	ENSE00001129277	chr5:137847293-137847164	130	ERF1_HUMAN	245-288	44	1	A:245-288	44
1.9d	ENST00000360541	9d	ENSE00001129273	chr5:137846889-137846734	156	ERF1_HUMAN	288-340	53	1	A:288-333	46
1.10	ENST00000360541	10	ENSE00001129268	chr5:137846318-137846254	65	ERF1_HUMAN	340-361	22	1	A:343-358	16
1.11	ENST00000360541	11	ENSE00001129265	chr5:137844505-137844358	148	ERF1_HUMAN	362-411	50	1	A:370-411	42
1.12b	ENST00000360541	12b	ENSE00001418290	chr5:137844076-137841788	2289	ERF1_HUMAN	411-437	27	1	A:411-422	12

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:398
 aligned with ERF1_HUMAN | P62495 from UniProtKB/Swiss-Prot  Length:437

    Alignment length:418
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414        
           ERF1_HUMAN     5 PSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGM 422
               SCOP domains d1dt9a3 A:5-142 N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1                                              d1dt9a1 A:143-276 Middle domain of eukaryotic peptide chain release factor subunit 1, ERF1                                            d1dt9a2 A:277-422 C-terminal domain of eukaryotic peptide          chain release f           actor subunit 1, ERF1                                 SCOP domains
               CATH domains -----------------------1dt9A01 A:28-132 Translation, Eukaryotic Peptide Chain Release Factor Subunit 1; Chain A, domain 1       ----------1dt9A02 A:143-174,A:198-277     -----------------------1dt9A02 A:143-174,A:198-277  [code=3.30.420.60, no name defined]                1dt9A03 A:278-422  [code=3.30.1330.30, no name defined]                                                                                           CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhh.......eeeeee....hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh.........eeeeeeeee.hhh.eeeeeeee.........eeeee....hhhhhhhh....eeeeee.......eeeee..eeeeee................hhhhhhhhhhhh....hhhhhhh...............eeee....hhhhhh..............eee.....hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh....eeehhhhhhhhhhh....eeeee..........---------................-----------...hhhhhhhhh.......eeee...hhhhhhhhhh...eeee.......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2a  PDB: A:5-29   ----------------------------------------------------------Exon 1.6a  PDB: A:88-134 UniProt: 88-134       Exon 1.7b  PDB: A:135-181 UniProt: 135-181     ---------------------------------------------------------------Exon 1.9b  PDB: A:245-288 UniProt: 245-288  ---------------------------------------------------Exon 1.10 [INCOMPLETE]Exon 1.11  PDB: A:370-411 UniProt: 362-411        ----------- Transcript 1 (1)
           Transcript 1 (2) ------------------------Exon 1.5  PDB: A:29-88 UniProt: 29-88                       --------------------------------------------------------------------------------------------Exon 1.8a  PDB: A:181-244 UniProt: 181-244                      -------------------------------------------Exon 1.9d  PDB: A:288-333 UniProt: 288-340           ----------------------------------------------------------------------Exon 1.12b   Transcript 1 (2)
                 1dt9 A   5 PSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVL---------ILYLTPEQEKDKSHFT-----------ESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGM 422
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324        |-       344       354   |     -     | 374       384       394       404       414        
                                                                                                                                                                                                                                                                                                                                                                  333       343            358         370

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (3, 3)

CATH Domains (3, 3)

Pfam Domains (0, 0)

Gene Ontology (14, 14)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (ERF1_HUMAN | P62495)

molecular function
	GO:0003723	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0043022	ribosome binding	Interacting selectively and non-covalently with any part of a ribosome.
	GO:0003747	translation release factor activity	Involved in catalyzing the release of a nascent polypeptide chain from a ribosome.
	GO:0016149	translation release factor activity, codon specific	A translation release factor that is specific for one or more particular termination codons; acts at the ribosomal A-site and require polypeptidyl-tRNA at the P-site.
	GO:0008079	translation termination factor activity	Functions in the termination of translation.
biological process
	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins.
	GO:0006479	protein methylation	The addition of a methyl group to a protein amino acid. A methyl group is derived from methane by the removal of a hydrogen atom.
	GO:0006449	regulation of translational termination	Any process that modulates the frequency, rate or extent of translational termination.
	GO:0006412	translation	The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
	GO:0006415	translational termination	The process resulting in the release of a polypeptide chain from the ribosome, usually in response to a termination codon (UAA, UAG, or UGA in the universal genetic code).
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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	1dt9
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	ERF1_HUMAN \| P62495
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (10, 10)