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(-) Description

Title :  CRYSTAL STRUCTURE OF E. COLI PERIPLASMIC PROTEIN HDEA
 
Authors :  K. S. Gajiwala, S. K. Burley
Date :  02 Dec 99  (Deposition) - 10 Dec 99  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Keywords :  Alpha Helical, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. S. Gajiwala, S. K. Burley
Hdea, A Periplasmic Protein That Supports Acid Resistance In Pathogenic Enteric Bacteria.
J. Mol. Biol. V. 295 605 2000
PubMed-ID: 10623550  |  Reference-DOI: 10.1006/JMBI.1999.3347
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTEIN HNS-DEPENDENT EXPRESSION A
    Cellular Location: PERIPLASM
    Chains: A, B, C, D, E, F
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Synonym: HDEA

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): AB    
Biological Unit 2 (1x):   CD  
Biological Unit 3 (1x):     EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1DJ8)

(-) Sites  (0, 0)

(no "Site" information available for 1DJ8)

(-) SS Bonds  (6, 6)

Asymmetric Unit
No.Residues
1A:18 -A:66
2B:18 -B:66
3C:18 -C:66
4D:18 -D:66
5E:18 -E:66
6F:18 -F:66

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1DJ8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1DJ8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1DJ8)

(-) Exons   (0, 0)

(no "Exon" information available for 1DJ8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:79
 aligned with HDEA_ECO57 | P0AET0 from UniProtKB/Swiss-Prot  Length:110

    Alignment length:79
                                    39        49        59        69        79        89        99         
           HDEA_ECO57    30 NKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKK 108
               SCOP domains d1dj8a_ A: Protein HNS-dependent expression A; HdeA                             SCOP domains
               CATH domains 1dj8A00 A:9-87  [code=1.10.890.10, no name defined]                             CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh..hhhhhhhhhhhhhhhhhh....hhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------- Transcript
                 1dj8 A   9 NKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKK  87
                                    18        28        38        48        58        68        78         


Chain A from PDB  Type:PROTEIN  Length:79
 aligned with HDEA_ECOLI | P0AES9 from UniProtKB/Swiss-Prot  Length:110

    Alignment length:79
                                    39        49        59        69        79        89        99         
           HDEA_ECOLI    30 NKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKK 108
               SCOP domains d1dj8a_ A: Protein HNS-dependent expression A; HdeA                             SCOP domains
               CATH domains 1dj8A00 A:9-87  [code=1.10.890.10, no name defined]                             CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh..hhhhhhhhhhhhhhhhhh....hhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------- Transcript
                 1dj8 A   9 NKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKK  87
                                    18        28        38        48        58        68        78         


Chain A from PDB  Type:PROTEIN  Length:79
 aligned with HDEA_SHIFL | P0AET1 from UniProtKB/Swiss-Prot  Length:110

    Alignment length:79
                                    39        49        59        69        79        89        99         
           HDEA_SHIFL    30 NKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKK 108
               SCOP domains d1dj8a_ A: Protein HNS-dependent expression A; HdeA                             SCOP domains
               CATH domains 1dj8A00 A:9-87  [code=1.10.890.10, no name defined]                             CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh..hhhhhhhhhhhhhhhhhh....hhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------- Transcript
                 1dj8 A   9 NKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKK  87
                                    18        28        38        48        58        68        78         


Chain B from PDB  Type:PROTEIN  Length:79
 aligned with HDEA_ECO57 | P0AET0 from UniProtKB/Swiss-Prot  Length:110

    Alignment length:79
                                    39        49        59        69        79        89        99         
           HDEA_ECO57    30 NKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKK 108
               SCOP domains d1dj8b_ B: Protein HNS-dependent expression A; HdeA                             SCOP domains
               CATH domains 1dj8B00 B:9-87  [code=1.10.890.10, no name defined]                             CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhh..hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------- Transcript
                 1dj8 B   9 NKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKK  87
                                    18        28        38        48        58        68        78         


Chain B from PDB  Type:PROTEIN  Length:79
 aligned with HDEA_ECOLI | P0AES9 from UniProtKB/Swiss-Prot  Length:110

    Alignment length:79
                                    39        49        59        69        79        89        99         
           HDEA_ECOLI    30 NKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKK 108
               SCOP domains d1dj8b_ B: Protein HNS-dependent expression A; HdeA                             SCOP domains
               CATH domains 1dj8B00 B:9-87  [code=1.10.890.10, no name defined]                             CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhh..hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------- Transcript
                 1dj8 B   9 NKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKK  87
                                    18        28        38        48        58        68        78         


Chain B from PDB  Type:PROTEIN  Length:79
 aligned with HDEA_SHIFL | P0AET1 from UniProtKB/Swiss-Prot  Length:110

    Alignment length:79
                                    39        49        59        69        79        89        99         
           HDEA_SHIFL    30 NKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKK 108
               SCOP domains d1dj8b_ B: Protein HNS-dependent expression A; HdeA                             SCOP domains
               CATH domains 1dj8B00 B:9-87  [code=1.10.890.10, no name defined]                             CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhh..hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------- Transcript
                 1dj8 B   9 NKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKK  87
                                    18        28        38        48        58        68        78         


Chain C from PDB  Type:PROTEIN  Length:79
 aligned with HDEA_ECO57 | P0AET0 from UniProtKB/Swiss-Prot  Length:110

    Alignment length:79
                                    39        49        59        69        79        89        99         
           HDEA_ECO57    30 NKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKK 108
               SCOP domains d1dj8c_ C: Protein HNS-dependent expression A; HdeA                             SCOP domains
               CATH domains 1dj8C00 C:9-87  [code=1.10.890.10, no name defined]                             CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------- Transcript
                 1dj8 C   9 NKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKK  87
                                    18        28        38        48        58        68        78         


Chain C from PDB  Type:PROTEIN  Length:79
 aligned with HDEA_ECOLI | P0AES9 from UniProtKB/Swiss-Prot  Length:110

    Alignment length:79
                                    39        49        59        69        79        89        99         
           HDEA_ECOLI    30 NKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKK 108
               SCOP domains d1dj8c_ C: Protein HNS-dependent expression A; HdeA                             SCOP domains
               CATH domains 1dj8C00 C:9-87  [code=1.10.890.10, no name defined]                             CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------- Transcript
                 1dj8 C   9 NKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKK  87
                                    18        28        38        48        58        68        78         


Chain C from PDB  Type:PROTEIN  Length:79
 aligned with HDEA_SHIFL | P0AET1 from UniProtKB/Swiss-Prot  Length:110

    Alignment length:79
                                    39        49        59        69        79        89        99         
           HDEA_SHIFL    30 NKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKK 108
               SCOP domains d1dj8c_ C: Protein HNS-dependent expression A; HdeA                             SCOP domains
               CATH domains 1dj8C00 C:9-87  [code=1.10.890.10, no name defined]                             CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------- Transcript
                 1dj8 C   9 NKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKK  87
                                    18        28        38        48        58        68        78         


Chain D from PDB  Type:PROTEIN  Length:79
 aligned with HDEA_ECO57 | P0AET0 from UniProtKB/Swiss-Prot  Length:110

    Alignment length:79
                                    39        49        59        69        79        89        99         
           HDEA_ECO57    30 NKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKK 108
               SCOP domains d1dj8d_ D: Protein HNS-dependent expression A; HdeA                             SCOP domains
               CATH domains 1dj8D00 D:9-87  [code=1.10.890.10, no name defined]                             CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh..hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------- Transcript
                 1dj8 D   9 NKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKK  87
                                    18        28        38        48        58        68        78         


Chain D from PDB  Type:PROTEIN  Length:79
 aligned with HDEA_ECOLI | P0AES9 from UniProtKB/Swiss-Prot  Length:110

    Alignment length:79
                                    39        49        59        69        79        89        99         
           HDEA_ECOLI    30 NKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKK 108
               SCOP domains d1dj8d_ D: Protein HNS-dependent expression A; HdeA                             SCOP domains
               CATH domains 1dj8D00 D:9-87  [code=1.10.890.10, no name defined]                             CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh..hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------- Transcript
                 1dj8 D   9 NKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKK  87
                                    18        28        38        48        58        68        78         


Chain D from PDB  Type:PROTEIN  Length:79
 aligned with HDEA_SHIFL | P0AET1 from UniProtKB/Swiss-Prot  Length:110

    Alignment length:79
                                    39        49        59        69        79        89        99         
           HDEA_SHIFL    30 NKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKK 108
               SCOP domains d1dj8d_ D: Protein HNS-dependent expression A; HdeA                             SCOP domains
               CATH domains 1dj8D00 D:9-87  [code=1.10.890.10, no name defined]                             CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh..hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------- Transcript
                 1dj8 D   9 NKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKK  87
                                    18        28        38        48        58        68        78         


Chain E from PDB  Type:PROTEIN  Length:79
 aligned with HDEA_ECO57 | P0AET0 from UniProtKB/Swiss-Prot  Length:110

    Alignment length:79
                                    39        49        59        69        79        89        99         
           HDEA_ECO57    30 NKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKK 108
               SCOP domains d1dj8e_ E: Protein HNS-dependent expression A; HdeA                             SCOP domains
               CATH domains 1dj8E00 E:9-87  [code=1.10.890.10, no name defined]                             CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh..hhhhhhhhhhhhhhhhhh....hhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------- Transcript
                 1dj8 E   9 NKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKK  87
                                    18        28        38        48        58        68        78         


Chain E from PDB  Type:PROTEIN  Length:79
 aligned with HDEA_ECOLI | P0AES9 from UniProtKB/Swiss-Prot  Length:110

    Alignment length:79
                                    39        49        59        69        79        89        99         
           HDEA_ECOLI    30 NKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKK 108
               SCOP domains d1dj8e_ E: Protein HNS-dependent expression A; HdeA                             SCOP domains
               CATH domains 1dj8E00 E:9-87  [code=1.10.890.10, no name defined]                             CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh..hhhhhhhhhhhhhhhhhh....hhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------- Transcript
                 1dj8 E   9 NKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKK  87
                                    18        28        38        48        58        68        78         


Chain E from PDB  Type:PROTEIN  Length:79
 aligned with HDEA_SHIFL | P0AET1 from UniProtKB/Swiss-Prot  Length:110

    Alignment length:79
                                    39        49        59        69        79        89        99         
           HDEA_SHIFL    30 NKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKK 108
               SCOP domains d1dj8e_ E: Protein HNS-dependent expression A; HdeA                             SCOP domains
               CATH domains 1dj8E00 E:9-87  [code=1.10.890.10, no name defined]                             CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh..hhhhhhhhhhhhhhhhhh....hhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------- Transcript
                 1dj8 E   9 NKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKK  87
                                    18        28        38        48        58        68        78         


Chain F from PDB  Type:PROTEIN  Length:79
 aligned with HDEA_ECO57 | P0AET0 from UniProtKB/Swiss-Prot  Length:110

    Alignment length:79
                                    39        49        59        69        79        89        99         
           HDEA_ECO57    30 NKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKK 108
               SCOP domains d1dj8f_ F: Protein HNS-dependent expression A; HdeA                             SCOP domains
               CATH domains 1dj8F00 F:9-87  [code=1.10.890.10, no name defined]                             CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh..hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------- Transcript
                 1dj8 F   9 NKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKK  87
                                    18        28        38        48        58        68        78         


Chain F from PDB  Type:PROTEIN  Length:79
 aligned with HDEA_ECOLI | P0AES9 from UniProtKB/Swiss-Prot  Length:110

    Alignment length:79
                                    39        49        59        69        79        89        99         
           HDEA_ECOLI    30 NKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKK 108
               SCOP domains d1dj8f_ F: Protein HNS-dependent expression A; HdeA                             SCOP domains
               CATH domains 1dj8F00 F:9-87  [code=1.10.890.10, no name defined]                             CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh..hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------- Transcript
                 1dj8 F   9 NKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKK  87
                                    18        28        38        48        58        68        78         


Chain F from PDB  Type:PROTEIN  Length:79
 aligned with HDEA_SHIFL | P0AET1 from UniProtKB/Swiss-Prot  Length:110

    Alignment length:79
                                    39        49        59        69        79        89        99         
           HDEA_SHIFL    30 NKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKK 108
               SCOP domains d1dj8f_ F: Protein HNS-dependent expression A; HdeA                             SCOP domains
               CATH domains 1dj8F00 F:9-87  [code=1.10.890.10, no name defined]                             CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh..hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------- Transcript
                 1dj8 F   9 NKKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKK  87
                                    18        28        38        48        58        68        78
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 6)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1DJ8)

(-) Gene Ontology  (5, 13)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (HDEA_ECOLI | P0AES9)
molecular function
    GO:0051087    chaperone binding    Interacting selectively and non-covalently with a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport.
biological process
    GO:0071468    cellular response to acidic pH    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus with pH < 7. pH is a measure of the acidity or basicity of an aqueous solution.
    GO:0033554    cellular response to stress    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
cellular component
    GO:0030288    outer membrane-bounded periplasmic space    The region between the inner (cytoplasmic or plasma) membrane and outer membrane of organisms with two membranes such as Gram negative bacteria. These periplasmic spaces are relatively thick and contain a thin peptidoglycan layer (PGL), also referred to as a thin cell wall.
    GO:0042597    periplasmic space    The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

Chain A,B,C,D,E,F   (HDEA_ECO57 | P0AET0)
biological process
    GO:0071468    cellular response to acidic pH    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus with pH < 7. pH is a measure of the acidity or basicity of an aqueous solution.
    GO:0033554    cellular response to stress    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
cellular component
    GO:0030288    outer membrane-bounded periplasmic space    The region between the inner (cytoplasmic or plasma) membrane and outer membrane of organisms with two membranes such as Gram negative bacteria. These periplasmic spaces are relatively thick and contain a thin peptidoglycan layer (PGL), also referred to as a thin cell wall.
    GO:0042597    periplasmic space    The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

Chain A,B,C,D,E,F   (HDEA_SHIFL | P0AET1)
biological process
    GO:0071468    cellular response to acidic pH    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus with pH < 7. pH is a measure of the acidity or basicity of an aqueous solution.
    GO:0033554    cellular response to stress    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
cellular component
    GO:0030288    outer membrane-bounded periplasmic space    The region between the inner (cytoplasmic or plasma) membrane and outer membrane of organisms with two membranes such as Gram negative bacteria. These periplasmic spaces are relatively thick and contain a thin peptidoglycan layer (PGL), also referred to as a thin cell wall.
    GO:0042597    periplasmic space    The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        HDEA_ECO57 | P0AET0: 1bg8
        HDEA_ECOLI | P0AES9: 1bg8
        HDEA_SHIFL | P0AET1: 1bg8

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1DJ8)