1DDO - JenaLib

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Asymmetric Unit (Jmol Viewer)

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Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Biological Unit 6 (Jmol Viewer)

Title :   REDUCED D-AMINO ACID OXIDASE FROM PIG KIDNEY IN COMPLEX WITH IMINO-TRP

Authors :   F. Todone, A. Mattevi

Date :   16 Jan 97 (Deposition) - 23 Jul 97 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.10

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,E  (1x)
Biol. Unit 2: B,F  (1x)
Biol. Unit 3: C,G  (1x)
Biol. Unit 4: D,H  (1x)
Biol. Unit 5: C,D,G,H  (1x)
Biol. Unit 6: A,B,E,F  (1x)

Keywords :   Flavoenzyme, Fad Cofactor, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   F. Todone, M. A. Vanoni, A. Mozzarelli, M. Bolognesi, A. Coda, B. Curti, A. Mattevi
Active Site Plasticity In D-Amino Acid Oxidase: A Crystallographic Analysis.
Biochemistry V. 36 5853 1997
PubMed-ID: 9153426 | Reference-DOI: 10.1021/BI9630570
(for further references see the PDB file header)

Molecule 1 - D-AMINO ACID OXIDASE
	Chains	:	A, B, C, D, E, F, G, H
	EC Number	:	1.4.3.3
	Organ	:	KIDNEY
	Organelle	:	PEROXISOME
	Organism Common	:	PIG
	Organism Scientific	:	SUS SCROFA
	Organism Taxid	:	9823
	Synonym	:	DAAO

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (1x)	:	A				E
Biological Unit 2 (1x)	:		B				F
Biological Unit 3 (1x)	:			C				G
Biological Unit 4 (1x)	:				D				H
Biological Unit 5 (1x)	:			C	D			G	H
Biological Unit 6 (1x)	:	A	B			E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 18)

No.	Name	Count	Type	Full Name
1	DTR	2	Ligand/Ion	D-TRYPTOPHAN
2	FAD	8	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
3	ITR	8	Ligand/Ion	IMINO-TRYPTOPHAN

Biological Unit 1 (3, 5)

No.	Name	Count	Type	Full Name
1	DTR	1	Ligand/Ion	D-TRYPTOPHAN
2	FAD	2	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
3	ITR	2	Ligand/Ion	IMINO-TRYPTOPHAN

Biological Unit 2 (3, 5)

No.	Name	Count	Type	Full Name
1	DTR	1	Ligand/Ion	D-TRYPTOPHAN
2	FAD	2	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
3	ITR	2	Ligand/Ion	IMINO-TRYPTOPHAN

Biological Unit 3 (2, 4)

No.	Name	Count	Type	Full Name
1	DTR	-1	Ligand/Ion	D-TRYPTOPHAN
2	FAD	2	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
3	ITR	2	Ligand/Ion	IMINO-TRYPTOPHAN

Biological Unit 4 (2, 4)

No.	Name	Count	Type	Full Name
1	DTR	-1	Ligand/Ion	D-TRYPTOPHAN
2	FAD	2	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
3	ITR	2	Ligand/Ion	IMINO-TRYPTOPHAN

Biological Unit 5 (2, 8)

No.	Name	Count	Type	Full Name
1	DTR	-1	Ligand/Ion	D-TRYPTOPHAN
2	FAD	4	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
3	ITR	4	Ligand/Ion	IMINO-TRYPTOPHAN

Biological Unit 6 (3, 10)

No.	Name	Count	Type	Full Name
1	DTR	2	Ligand/Ion	D-TRYPTOPHAN
2	FAD	4	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
3	ITR	4	Ligand/Ion	IMINO-TRYPTOPHAN

Asymmetric Unit (26, 26)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLY A:7 , ALA A:8 , GLY A:9 , VAL A:10 , ILE A:11 , ALA A:36 , ASP A:37 , ARG A:38 , THR A:43 , THR A:44 , THR A:45 , VAL A:47 , ALA A:48 , ALA A:49 , GLY A:50 , LEU A:51 , ARG A:162 , LYS A:163 , VAL A:164 , CYS A:181 , THR A:182 , TRP A:185 , GLY A:281 , ARG A:283 , GLY A:312 , GLY A:313 , TYR A:314 , GLY A:315 , LEU A:316 , THR A:317 , ITR A:349 , HOH A:361 , HOH A:364	BINDING SITE FOR RESIDUE FAD A 348
02	AC2	SOFTWARE	GLN A:53 , PRO A:54 , HIS A:217 , TYR A:228 , ARG A:283 , GLY A:313 , FAD A:348	BINDING SITE FOR RESIDUE ITR A 349
03	AC3	SOFTWARE	GLY B:7 , ALA B:8 , GLY B:9 , VAL B:10 , ILE B:11 , ALA B:36 , ASP B:37 , ARG B:38 , THR B:43 , THR B:44 , THR B:45 , VAL B:47 , ALA B:48 , ALA B:49 , GLY B:50 , LEU B:51 , ARG B:162 , LYS B:163 , VAL B:164 , CYS B:181 , THR B:182 , TRP B:185 , GLY B:281 , ARG B:283 , GLY B:312 , GLY B:313 , TYR B:314 , GLY B:315 , LEU B:316 , THR B:317 , ITR B:349	BINDING SITE FOR RESIDUE FAD B 348
04	AC4	SOFTWARE	GLN B:53 , PRO B:54 , TYR B:224 , TYR B:228 , ARG B:283 , GLY B:313 , FAD B:348	BINDING SITE FOR RESIDUE ITR B 349
05	AC5	SOFTWARE	GLY C:7 , ALA C:8 , GLY C:9 , VAL C:10 , ILE C:11 , ALA C:36 , ASP C:37 , ARG C:38 , THR C:43 , THR C:44 , THR C:45 , VAL C:47 , ALA C:48 , ALA C:49 , GLY C:50 , LEU C:51 , ARG C:162 , LYS C:163 , VAL C:164 , CYS C:181 , THR C:182 , TRP C:185 , GLY C:281 , ARG C:283 , GLY C:312 , GLY C:313 , TYR C:314 , GLY C:315 , LEU C:316 , THR C:317 , ITR C:349	BINDING SITE FOR RESIDUE FAD C 348
06	AC6	SOFTWARE	GLN C:53 , PRO C:54 , HIS C:217 , TYR C:228 , ARG C:283 , GLY C:313 , FAD C:348	BINDING SITE FOR RESIDUE ITR C 349
07	AC7	SOFTWARE	GLY D:7 , ALA D:8 , GLY D:9 , VAL D:10 , ILE D:11 , ALA D:36 , ASP D:37 , ARG D:38 , THR D:43 , THR D:44 , THR D:45 , VAL D:47 , ALA D:48 , ALA D:49 , GLY D:50 , LEU D:51 , ARG D:162 , LYS D:163 , VAL D:164 , CYS D:181 , THR D:182 , TRP D:185 , GLY D:281 , ARG D:283 , GLY D:312 , GLY D:313 , TYR D:314 , GLY D:315 , LEU D:316 , THR D:317 , ITR D:349 , HOH D:352	BINDING SITE FOR RESIDUE FAD D 348
08	AC8	SOFTWARE	GLN D:53 , PRO D:54 , HIS D:217 , ILE D:223 , TYR D:224 , TYR D:228 , ARG D:283 , GLY D:313 , FAD D:348	BINDING SITE FOR RESIDUE ITR D 349
09	AC9	SOFTWARE	GLY E:7 , ALA E:8 , GLY E:9 , VAL E:10 , ILE E:11 , ALA E:36 , ASP E:37 , ARG E:38 , THR E:43 , THR E:44 , THR E:45 , VAL E:47 , ALA E:48 , ALA E:49 , GLY E:50 , LEU E:51 , ARG E:162 , LYS E:163 , VAL E:164 , CYS E:181 , THR E:182 , TRP E:185 , GLY E:281 , ARG E:283 , GLY E:312 , GLY E:313 , TYR E:314 , GLY E:315 , LEU E:316 , THR E:317 , ITR E:349	BINDING SITE FOR RESIDUE FAD E 348
10	BC1	SOFTWARE	GLN E:53 , PRO E:54 , TYR E:228 , ARG E:283 , GLY E:313 , FAD E:348	BINDING SITE FOR RESIDUE ITR E 349
11	BC2	SOFTWARE	GLY F:7 , ALA F:8 , GLY F:9 , VAL F:10 , ILE F:11 , ALA F:36 , ASP F:37 , ARG F:38 , THR F:43 , THR F:44 , THR F:45 , VAL F:47 , ALA F:48 , ALA F:49 , GLY F:50 , LEU F:51 , ARG F:162 , LYS F:163 , VAL F:164 , CYS F:181 , THR F:182 , TRP F:185 , GLY F:281 , ARG F:283 , GLY F:312 , GLY F:313 , TYR F:314 , GLY F:315 , LEU F:316 , THR F:317 , ITR F:349 , HOH F:364 , HOH F:369	BINDING SITE FOR RESIDUE FAD F 348
12	BC3	SOFTWARE	GLN F:53 , PRO F:54 , HIS F:217 , ILE F:223 , TYR F:224 , TYR F:228 , ARG F:283 , GLY F:313 , FAD F:348	BINDING SITE FOR RESIDUE ITR F 349
13	BC4	SOFTWARE	GLY G:7 , ALA G:8 , GLY G:9 , VAL G:10 , ILE G:11 , ALA G:36 , ASP G:37 , ARG G:38 , THR G:43 , THR G:44 , THR G:45 , VAL G:47 , ALA G:48 , ALA G:49 , GLY G:50 , LEU G:51 , ARG G:162 , LYS G:163 , VAL G:164 , CYS G:181 , THR G:182 , TRP G:185 , GLY G:281 , ARG G:283 , GLY G:312 , GLY G:313 , TYR G:314 , GLY G:315 , LEU G:316 , THR G:317 , ITR G:349	BINDING SITE FOR RESIDUE FAD G 348
14	BC5	SOFTWARE	GLN G:53 , PRO G:54 , TYR G:224 , TYR G:228 , ARG G:283 , GLY G:313 , FAD G:348	BINDING SITE FOR RESIDUE ITR G 349
15	BC6	SOFTWARE	GLY H:7 , ALA H:8 , GLY H:9 , VAL H:10 , ILE H:11 , ALA H:36 , ASP H:37 , ARG H:38 , THR H:43 , THR H:44 , THR H:45 , VAL H:47 , ALA H:48 , ALA H:49 , GLY H:50 , LEU H:51 , ARG H:162 , LYS H:163 , VAL H:164 , CYS H:181 , THR H:182 , TRP H:185 , GLY H:281 , ARG H:283 , GLY H:312 , GLY H:313 , TYR H:314 , GLY H:315 , LEU H:316 , THR H:317 , ITR H:349	BINDING SITE FOR RESIDUE FAD H 348
16	BC7	SOFTWARE	GLN H:53 , PRO H:54 , TYR H:228 , ARG H:283 , GLY H:313 , FAD H:348	BINDING SITE FOR RESIDUE ITR H 349
17	BC8	SOFTWARE	GLU A:169 , ARG E:2 , ASP E:31 , LYS E:33 , GLY E:173	BINDING SITE FOR RESIDUE DTR E 350
18	BC9	SOFTWARE	GLU B:169 , ARG F:2 , ASP F:31 , LYS F:33 , GLY F:173 , GLY F:174	BINDING SITE FOR RESIDUE DTR F 350
19	FAA	UNKNOWN	FAD A:348	COFACTOR.
20	FAB	UNKNOWN	FAD B:348	COFACTOR.
21	FAC	UNKNOWN	FAD C:348	COFACTOR.
22	FAD	UNKNOWN	FAD D:348	COFACTOR.
23	FAE	UNKNOWN	FAD E:348	COFACTOR.
24	FAF	UNKNOWN	FAD F:348	COFACTOR.
25	FAG	UNKNOWN	FAD G:348	COFACTOR.
26	FAH	UNKNOWN	FAD H:348	COFACTOR.

(no "SS Bond" information available for 1DDO)

Asymmetric Unit

No.	Residues
1	Thr A:40	-	Pro A:41
2	Thr B:40	-	Pro B:41
3	Thr C:40	-	Pro C:41
4	Thr D:40	-	Pro D:41
5	Thr E:40	-	Pro E:41
6	Thr F:40	-	Pro F:41
7	Thr G:40	-	Pro G:41
8	Thr H:40	-	Pro H:41

(no "SAP(SNP)/Variant" information available for 1DDO)

Asymmetric Unit (1, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	DAO	PS00677	D-amino acid oxidases signature.	OXDA_PIG	305-323	8	A:305-323 B:305-323 C:305-323 D:305-323 E:305-323 F:305-323 G:305-323 H:305-323

Biological Unit 1 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	DAO	PS00677	D-amino acid oxidases signature.	OXDA_PIG	305-323	2	A:305-323 - - - E:305-323 - - -

Biological Unit 2 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	DAO	PS00677	D-amino acid oxidases signature.	OXDA_PIG	305-323	2	- B:305-323 - - - F:305-323 - -

Biological Unit 3 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	DAO	PS00677	D-amino acid oxidases signature.	OXDA_PIG	305-323	2	- - C:305-323 - - - G:305-323 -

Biological Unit 4 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	DAO	PS00677	D-amino acid oxidases signature.	OXDA_PIG	305-323	2	- - - D:305-323 - - - H:305-323

Biological Unit 5 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	DAO	PS00677	D-amino acid oxidases signature.	OXDA_PIG	305-323	4	- - C:305-323 D:305-323 - - G:305-323 H:305-323

Biological Unit 6 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	DAO	PS00677	D-amino acid oxidases signature.	OXDA_PIG	305-323	4	A:305-323 B:305-323 - - E:305-323 F:305-323 - -

(no "Exon" information available for 1DDO)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:339
 aligned with OXDA_PIG | P00371 from UniProtKB/Swiss-Prot  Length:347

    Alignment length:339
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330         
             OXDA_PIG     1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTDVAAGLWQPYTSEPSNPQEANWNQQTFNYLLSHIGSPNAANMGLTPVSGYNLFREAVPDPYWKDMVLGFRKLTPRELDMFPDYRYGWFNTSLILEGRKYLQWLTERLTERGVKFFLRKVESFEEVARGGADVIINCTGVWAGVLQPDPLLQPGRGQIIKVDAPWLKNFIITHDLERGIYNSPYIIPGLQAVTLGGTFQVGNWNEINNIQDHNTIWEGCCRLEPTLKDAKIVGEYTGFRPVRPQVRLEREQLRFGSSNTEVIHNYGHGGYGLTIHWGCALEVAKLFGKVLEERNL 339
               SCOP domains d1ddoa1 A:1-194,A:288-339 D-aminoacid oxidase, N-terminal domain                                                                                                                                  d1ddoa2 A:195-287 D-aminoacid oxidase                                                        d1ddoa1 A:1-194,A:288-339                            SCOP domains
               CATH domains 1ddoA01 A:1-88,A:140-195,A:286-339 NAD(P)-binding Rossmann-like Domain                  1ddoA02 A:89-139,A:196-285                         1ddoA01 A:1-88,A:140-195,A:286-339                      1ddoA02 A:89-139,A:196-285 D-Amino Acid Oxidase, subunit A, domain 2                      1ddoA01 A:1-88,A:140-195,A:286-339                     CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhh.......eeeeee........hhh..............hhhhhhhhhhhhhhhhh..........eeeeeeeeee.......hhhh.........hhhhhh.....eeeeeeeeee.hhhhhhhhhhhhhhh..eeee.....hhhhhhh...eeee..hhhhhhh......eeeeeeeeeee.....eeeeee..........eeee....eeee.............hhhhhhhhhhhhhh.hhhhh.eeeeeeeeeeee....eeeeeeeee..eeeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DAO  PDB: A:305-323---------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ddo A   1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTDVAAGLWQPYTSEPSNPQEANWNQQTFNYLLSHIGSPNAANMGLTPVSGYNLFREAVPDPYWKDMVLGFRKLTPRELDMFPDYRYGWFNTSLILEGRKYLQWLTERLTERGVKFFLRKVESFEEVARGGADVIINCTGVWAGVLQPDPLLQPGRGQIIKVDAPWLKNFIITHDLERGIYNSPYIIPGLQAVTLGGTFQVGNWNEINNIQDHNTIWEGCCRLEPTLKDAKIVGEYTGFRPVRPQVRLEREQLRFGSSNTEVIHNYGHGGYGLTIHWGCALEVAKLFGKVLEERNL 339
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330

Chain B from PDB  Type:PROTEIN  Length:339
 aligned with OXDA_PIG | P00371 from UniProtKB/Swiss-Prot  Length:347

    Alignment length:339
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330         
             OXDA_PIG     1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTDVAAGLWQPYTSEPSNPQEANWNQQTFNYLLSHIGSPNAANMGLTPVSGYNLFREAVPDPYWKDMVLGFRKLTPRELDMFPDYRYGWFNTSLILEGRKYLQWLTERLTERGVKFFLRKVESFEEVARGGADVIINCTGVWAGVLQPDPLLQPGRGQIIKVDAPWLKNFIITHDLERGIYNSPYIIPGLQAVTLGGTFQVGNWNEINNIQDHNTIWEGCCRLEPTLKDAKIVGEYTGFRPVRPQVRLEREQLRFGSSNTEVIHNYGHGGYGLTIHWGCALEVAKLFGKVLEERNL 339
               SCOP domains d1ddob1 B:1-194,B:288-339 D-aminoacid oxidase, N-terminal domain                                                                                                                                  d1ddob2 B:195-287 D-aminoacid oxidase                                                        d1ddob1 B:1-194,B:288-339                            SCOP domains
               CATH domains 1ddoB01 B:1-88,B:140-195,B:286-339 NAD(P)-binding Rossmann-like Domain                  1ddoB02 B:89-139,B:196-285                         1ddoB01 B:1-88,B:140-195,B:286-339                      1ddoB02 B:89-139,B:196-285 D-Amino Acid Oxidase, subunit A, domain 2                      1ddoB01 B:1-88,B:140-195,B:286-339                     CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhh.......eeeeee........hhh..............hhhhhhhhhhhhhhhhh..........eeeeeeeeee.......hhhh.........hhhhhhh....eeeeeeeeee.hhhhhhhhhhhhhhh..eeee.....hhhhhh....eeee..hhhhhhh......eeeeeeeeeee.....eeeee...........eeee....eeee.............hhhhhhhhhhhhhh.hhhhh.eeeeeeeeeeee....eeeeeeeee..eeeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DAO  PDB: B:305-323---------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ddo B   1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTDVAAGLWQPYTSEPSNPQEANWNQQTFNYLLSHIGSPNAANMGLTPVSGYNLFREAVPDPYWKDMVLGFRKLTPRELDMFPDYRYGWFNTSLILEGRKYLQWLTERLTERGVKFFLRKVESFEEVARGGADVIINCTGVWAGVLQPDPLLQPGRGQIIKVDAPWLKNFIITHDLERGIYNSPYIIPGLQAVTLGGTFQVGNWNEINNIQDHNTIWEGCCRLEPTLKDAKIVGEYTGFRPVRPQVRLEREQLRFGSSNTEVIHNYGHGGYGLTIHWGCALEVAKLFGKVLEERNL 339
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330

Chain C from PDB  Type:PROTEIN  Length:339
 aligned with OXDA_PIG | P00371 from UniProtKB/Swiss-Prot  Length:347

    Alignment length:339
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330         
             OXDA_PIG     1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTDVAAGLWQPYTSEPSNPQEANWNQQTFNYLLSHIGSPNAANMGLTPVSGYNLFREAVPDPYWKDMVLGFRKLTPRELDMFPDYRYGWFNTSLILEGRKYLQWLTERLTERGVKFFLRKVESFEEVARGGADVIINCTGVWAGVLQPDPLLQPGRGQIIKVDAPWLKNFIITHDLERGIYNSPYIIPGLQAVTLGGTFQVGNWNEINNIQDHNTIWEGCCRLEPTLKDAKIVGEYTGFRPVRPQVRLEREQLRFGSSNTEVIHNYGHGGYGLTIHWGCALEVAKLFGKVLEERNL 339
               SCOP domains d1ddoc1 C:1-194,C:288-339 D-aminoacid oxidase, N-terminal domain                                                                                                                                  d1ddoc2 C:195-287 D-aminoacid oxidase                                                        d1ddoc1 C:1-194,C:288-339                            SCOP domains
               CATH domains 1ddoC01 C:1-88,C:140-195,C:286-339 NAD(P)-binding Rossmann-like Domain                  1ddoC02 C:89-139,C:196-285                         1ddoC01 C:1-88,C:140-195,C:286-339                      1ddoC02 C:89-139,C:196-285 D-Amino Acid Oxidase, subunit A, domain 2                      1ddoC01 C:1-88,C:140-195,C:286-339                     CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhh........eeeeee........hhh..............hhhhhhhhhhhhhhhhh..........eeeeeeeeee.......hhhh.........hhhhhhh....eeeeeeeeee.hhhhhhhhhhhhhhh..eeee.....hhhhhh....eeee..hhhhhhh......eeeeeeeeeee.....eeeeee..........eeee....eeee.............hhhhhhhhhhhhhh.hhhhh.eeeeeeeeeeee....eeeeeeeee..eeeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DAO  PDB: C:305-323---------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ddo C   1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTDVAAGLWQPYTSEPSNPQEANWNQQTFNYLLSHIGSPNAANMGLTPVSGYNLFREAVPDPYWKDMVLGFRKLTPRELDMFPDYRYGWFNTSLILEGRKYLQWLTERLTERGVKFFLRKVESFEEVARGGADVIINCTGVWAGVLQPDPLLQPGRGQIIKVDAPWLKNFIITHDLERGIYNSPYIIPGLQAVTLGGTFQVGNWNEINNIQDHNTIWEGCCRLEPTLKDAKIVGEYTGFRPVRPQVRLEREQLRFGSSNTEVIHNYGHGGYGLTIHWGCALEVAKLFGKVLEERNL 339
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330

Chain D from PDB  Type:PROTEIN  Length:339
 aligned with OXDA_PIG | P00371 from UniProtKB/Swiss-Prot  Length:347

    Alignment length:339
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330         
             OXDA_PIG     1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTDVAAGLWQPYTSEPSNPQEANWNQQTFNYLLSHIGSPNAANMGLTPVSGYNLFREAVPDPYWKDMVLGFRKLTPRELDMFPDYRYGWFNTSLILEGRKYLQWLTERLTERGVKFFLRKVESFEEVARGGADVIINCTGVWAGVLQPDPLLQPGRGQIIKVDAPWLKNFIITHDLERGIYNSPYIIPGLQAVTLGGTFQVGNWNEINNIQDHNTIWEGCCRLEPTLKDAKIVGEYTGFRPVRPQVRLEREQLRFGSSNTEVIHNYGHGGYGLTIHWGCALEVAKLFGKVLEERNL 339
               SCOP domains d1ddod1 D:1-194,D:288-339 D-aminoacid oxidase, N-terminal domain                                                                                                                                  d1ddod2 D:195-287 D-aminoacid oxidase                                                        d1ddod1 D:1-194,D:288-339                            SCOP domains
               CATH domains 1ddoD01 D:1-88,D:140-195,D:286-339 NAD(P)-binding Rossmann-like Domain                  1ddoD02 D:89-139,D:196-285                         1ddoD01 D:1-88,D:140-195,D:286-339                      1ddoD02 D:89-139,D:196-285 D-Amino Acid Oxidase, subunit A, domain 2                      1ddoD01 D:1-88,D:140-195,D:286-339                     CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhh.......eeeeee........hhh..............hhhhhhhhhhhhhhhhh..........eeeeeeeeee.......hhhh.........hhhhhh.....eeeeeeeeee.hhhhhhhhhhhhhhh..eeee.....hhhhhhh...eeee..hhhhhhh......eeeeeeeeeee.....eeeeee..........eeee....eeee.............hhhhhhhhhhhhhh.hhhhh.eeeeeeeeeeee....eeeeeeeee..eeeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DAO  PDB: D:305-323---------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ddo D   1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTDVAAGLWQPYTSEPSNPQEANWNQQTFNYLLSHIGSPNAANMGLTPVSGYNLFREAVPDPYWKDMVLGFRKLTPRELDMFPDYRYGWFNTSLILEGRKYLQWLTERLTERGVKFFLRKVESFEEVARGGADVIINCTGVWAGVLQPDPLLQPGRGQIIKVDAPWLKNFIITHDLERGIYNSPYIIPGLQAVTLGGTFQVGNWNEINNIQDHNTIWEGCCRLEPTLKDAKIVGEYTGFRPVRPQVRLEREQLRFGSSNTEVIHNYGHGGYGLTIHWGCALEVAKLFGKVLEERNL 339
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330

Chain E from PDB  Type:PROTEIN  Length:339
 aligned with OXDA_PIG | P00371 from UniProtKB/Swiss-Prot  Length:347

    Alignment length:339
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330         
             OXDA_PIG     1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTDVAAGLWQPYTSEPSNPQEANWNQQTFNYLLSHIGSPNAANMGLTPVSGYNLFREAVPDPYWKDMVLGFRKLTPRELDMFPDYRYGWFNTSLILEGRKYLQWLTERLTERGVKFFLRKVESFEEVARGGADVIINCTGVWAGVLQPDPLLQPGRGQIIKVDAPWLKNFIITHDLERGIYNSPYIIPGLQAVTLGGTFQVGNWNEINNIQDHNTIWEGCCRLEPTLKDAKIVGEYTGFRPVRPQVRLEREQLRFGSSNTEVIHNYGHGGYGLTIHWGCALEVAKLFGKVLEERNL 339
               SCOP domains d1ddoe1 E:1-194,E:288-339 D-aminoacid oxidase, N-terminal domain                                                                                                                                  d1ddoe2 E:195-287 D-aminoacid oxidase                                                        d1ddoe1 E:1-194,E:288-339                            SCOP domains
               CATH domains 1ddoE01 E:1-88,E:140-195,E:286-339 NAD(P)-binding Rossmann-like Domain                  1ddoE02 E:89-139,E:196-285                         1ddoE01 E:1-88,E:140-195,E:286-339                      1ddoE02 E:89-139,E:196-285 D-Amino Acid Oxidase, subunit A, domain 2                      1ddoE01 E:1-88,E:140-195,E:286-339                     CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhh.......eeeeee........hhh...............hhhhhhhhhhhhhhhh..........eeeeeeeeee.......hhhh.........hhhhhh.....eeeeeeeeee.hhhhhhhhhhhhhhh..eeee.....hhhhhh....eeee..hhhhhhh......eeeeeeeeeee.....eeeee...........eeee....eeee.............hhhhhhhhhhhhhh.hhhhh.eeeeeeeeeeee....eeeeeeeee..eeeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DAO  PDB: E:305-323---------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ddo E   1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTDVAAGLWQPYTSEPSNPQEANWNQQTFNYLLSHIGSPNAANMGLTPVSGYNLFREAVPDPYWKDMVLGFRKLTPRELDMFPDYRYGWFNTSLILEGRKYLQWLTERLTERGVKFFLRKVESFEEVARGGADVIINCTGVWAGVLQPDPLLQPGRGQIIKVDAPWLKNFIITHDLERGIYNSPYIIPGLQAVTLGGTFQVGNWNEINNIQDHNTIWEGCCRLEPTLKDAKIVGEYTGFRPVRPQVRLEREQLRFGSSNTEVIHNYGHGGYGLTIHWGCALEVAKLFGKVLEERNL 339
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330

Chain F from PDB  Type:PROTEIN  Length:339
 aligned with OXDA_PIG | P00371 from UniProtKB/Swiss-Prot  Length:347

    Alignment length:339
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330         
             OXDA_PIG     1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTDVAAGLWQPYTSEPSNPQEANWNQQTFNYLLSHIGSPNAANMGLTPVSGYNLFREAVPDPYWKDMVLGFRKLTPRELDMFPDYRYGWFNTSLILEGRKYLQWLTERLTERGVKFFLRKVESFEEVARGGADVIINCTGVWAGVLQPDPLLQPGRGQIIKVDAPWLKNFIITHDLERGIYNSPYIIPGLQAVTLGGTFQVGNWNEINNIQDHNTIWEGCCRLEPTLKDAKIVGEYTGFRPVRPQVRLEREQLRFGSSNTEVIHNYGHGGYGLTIHWGCALEVAKLFGKVLEERNL 339
               SCOP domains d1ddof1 F:1-194,F:288-339 D-aminoacid oxidase, N-terminal domain                                                                                                                                  d1ddof2 F:195-287 D-aminoacid oxidase                                                        d1ddof1 F:1-194,F:288-339                            SCOP domains
               CATH domains 1ddoF01 F:1-88,F:140-195,F:286-339 NAD(P)-binding Rossmann-like Domain                  1ddoF02 F:89-139,F:196-285                         1ddoF01 F:1-88,F:140-195,F:286-339                      1ddoF02 F:89-139,F:196-285 D-Amino Acid Oxidase, subunit A, domain 2                      1ddoF01 F:1-88,F:140-195,F:286-339                     CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhh.......eeeeee........hhh...............hhhhhhhhhhhhhhhh..........eeeeeeeeee.......hhhh.........hhhhhh.....eeeeeeeeee.hhhhhhhhhhhhhhh..eeee.....hhhhhhhh..eeee..hhhhhhh......eeeeeeeeeee.....eeeee...........eeee....eeee.............hhhhhhhhhhhhhh.hhhhh.eeeeeeeeeeee....eeeeeeeee..eeeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DAO  PDB: F:305-323---------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ddo F   1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTDVAAGLWQPYTSEPSNPQEANWNQQTFNYLLSHIGSPNAANMGLTPVSGYNLFREAVPDPYWKDMVLGFRKLTPRELDMFPDYRYGWFNTSLILEGRKYLQWLTERLTERGVKFFLRKVESFEEVARGGADVIINCTGVWAGVLQPDPLLQPGRGQIIKVDAPWLKNFIITHDLERGIYNSPYIIPGLQAVTLGGTFQVGNWNEINNIQDHNTIWEGCCRLEPTLKDAKIVGEYTGFRPVRPQVRLEREQLRFGSSNTEVIHNYGHGGYGLTIHWGCALEVAKLFGKVLEERNL 339
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330

Chain G from PDB  Type:PROTEIN  Length:339
 aligned with OXDA_PIG | P00371 from UniProtKB/Swiss-Prot  Length:347

    Alignment length:339
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330         
             OXDA_PIG     1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTDVAAGLWQPYTSEPSNPQEANWNQQTFNYLLSHIGSPNAANMGLTPVSGYNLFREAVPDPYWKDMVLGFRKLTPRELDMFPDYRYGWFNTSLILEGRKYLQWLTERLTERGVKFFLRKVESFEEVARGGADVIINCTGVWAGVLQPDPLLQPGRGQIIKVDAPWLKNFIITHDLERGIYNSPYIIPGLQAVTLGGTFQVGNWNEINNIQDHNTIWEGCCRLEPTLKDAKIVGEYTGFRPVRPQVRLEREQLRFGSSNTEVIHNYGHGGYGLTIHWGCALEVAKLFGKVLEERNL 339
               SCOP domains d1ddog1 G:1-194,G:288-339 D-aminoacid oxidase, N-terminal domain                                                                                                                                  d1ddog2 G:195-287 D-aminoacid oxidase                                                        d1ddog1 G:1-194,G:288-339                            SCOP domains
               CATH domains 1ddoG01 G:1-88,G:140-195,G:286-339 NAD(P)-binding Rossmann-like Domain                  1ddoG02 G:89-139,G:196-285                         1ddoG01 G:1-88,G:140-195,G:286-339                      1ddoG02 G:89-139,G:196-285 D-Amino Acid Oxidase, subunit A, domain 2                      1ddoG01 G:1-88,G:140-195,G:286-339                     CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhh.......eeeeee........hhh..............hhhhhhhhhhhhhhhhh..........eeeeeeeeee.......hhhh.........hhhhhh.....eeeeeeeeee.hhhhhhhhhhhhhhh..eeee.....hhhhhhhh..eeee..hhhhhhh......eeeeeeeeeee.....eeeeee..........eeee....eeee.............hhhhhhhhhhhhhh.hhhhh.eeeeeeeeeeee....eeeeeeeee..eeeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DAO  PDB: G:305-323---------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ddo G   1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTDVAAGLWQPYTSEPSNPQEANWNQQTFNYLLSHIGSPNAANMGLTPVSGYNLFREAVPDPYWKDMVLGFRKLTPRELDMFPDYRYGWFNTSLILEGRKYLQWLTERLTERGVKFFLRKVESFEEVARGGADVIINCTGVWAGVLQPDPLLQPGRGQIIKVDAPWLKNFIITHDLERGIYNSPYIIPGLQAVTLGGTFQVGNWNEINNIQDHNTIWEGCCRLEPTLKDAKIVGEYTGFRPVRPQVRLEREQLRFGSSNTEVIHNYGHGGYGLTIHWGCALEVAKLFGKVLEERNL 339
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330

Chain H from PDB  Type:PROTEIN  Length:339
 aligned with OXDA_PIG | P00371 from UniProtKB/Swiss-Prot  Length:347

    Alignment length:339
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330         
             OXDA_PIG     1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTDVAAGLWQPYTSEPSNPQEANWNQQTFNYLLSHIGSPNAANMGLTPVSGYNLFREAVPDPYWKDMVLGFRKLTPRELDMFPDYRYGWFNTSLILEGRKYLQWLTERLTERGVKFFLRKVESFEEVARGGADVIINCTGVWAGVLQPDPLLQPGRGQIIKVDAPWLKNFIITHDLERGIYNSPYIIPGLQAVTLGGTFQVGNWNEINNIQDHNTIWEGCCRLEPTLKDAKIVGEYTGFRPVRPQVRLEREQLRFGSSNTEVIHNYGHGGYGLTIHWGCALEVAKLFGKVLEERNL 339
               SCOP domains d1ddoh1 H:1-194,H:288-339 D-aminoacid oxidase, N-terminal domain                                                                                                                                  d1ddoh2 H:195-287 D-aminoacid oxidase                                                        d1ddoh1 H:1-194,H:288-339                            SCOP domains
               CATH domains 1ddoH01 H:1-88,H:140-195,H:286-339 NAD(P)-binding Rossmann-like Domain                  1ddoH02 H:89-139,H:196-285                         1ddoH01 H:1-88,H:140-195,H:286-339                      1ddoH02 H:89-139,H:196-285 D-Amino Acid Oxidase, subunit A, domain 2                      1ddoH01 H:1-88,H:140-195,H:286-339                     CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhh........eeeeee........hhh..............hhhhhhhhhhhhhhhhh..........eeeeeeeeee.......hhhh.........hhhhhh.....eeeeeeeeee.hhhhhhhhhhhhhhh..eeee.....hhhhhh....eeee..hhhhhhh......eeeeeeeeeee.....eeeeee..........eeee....eeee.............hhhhhhhhhhhhhh.hhhhh.eeeeeeeeeeee....eeeeeeeee..eeeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DAO  PDB: H:305-323---------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ddo H   1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTDVAAGLWQPYTSEPSNPQEANWNQQTFNYLLSHIGSPNAANMGLTPVSGYNLFREAVPDPYWKDMVLGFRKLTPRELDMFPDYRYGWFNTSLILEGRKYLQWLTERLTERGVKFFLRKVESFEEVARGGADVIINCTGVWAGVLQPDPLLQPGRGQIIKVDAPWLKNFIITHDLERGIYNSPYIIPGLQAVTLGGTFQVGNWNEINNIQDHNTIWEGCCRLEPTLKDAKIVGEYTGFRPVRPQVRLEREQLRFGSSNTEVIHNYGHGGYGLTIHWGCALEVAKLFGKVLEERNL 339
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: FAD-linked reductases, C-terminal domain (181)

Superfamily: FAD-linked reductases, C-terminal domain (181)

Family: D-aminoacid oxidase-like (29)

Protein domain: D-aminoacid oxidase (10)

Pig (Sus scrofa) [TaxId: 9823] (6)

1a	d1ddoa2	A:195-287
1b	d1ddob2	B:195-287
1c	d1ddoc2	C:195-287
1d	d1ddod2	D:195-287
1e	d1ddoe2	E:195-287
1f	d1ddof2	F:195-287
1g	d1ddog2	G:195-287
1h	d1ddoh2	H:195-287

Class: Alpha and beta proteins (a/b) (23833)

Fold: Nucleotide-binding domain (33)

Superfamily: Nucleotide-binding domain (33)

Family: D-aminoacid oxidase, N-terminal domain (10)

Protein domain: D-aminoacid oxidase, N-terminal domain (10)

Pig (Sus scrofa) [TaxId: 9823] (6)

2a	d1ddoa1	A:1-194,A:288-339
2b	d1ddob1	B:1-194,B:288-339
2c	d1ddoc1	C:1-194,C:288-339
2d	d1ddod1	D:1-194,D:288-339
2e	d1ddoe1	E:1-194,E:288-339
2f	d1ddof1	F:1-194,F:288-339
2g	d1ddog1	G:1-194,G:288-339
2h	d1ddoh1	H:1-194,H:288-339

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: D-Amino Acid Oxidase; Chain A, domain 2 (80)

Homologous Superfamily: D-Amino Acid Oxidase, subunit A, domain 2 (80)

Pig (Sus scrofa) (6)

1a	1ddoA02	A:89-139,A:196-285
1b	1ddoB02	B:89-139,B:196-285
1c	1ddoC02	C:89-139,C:196-285
1d	1ddoD02	D:89-139,D:196-285
1e	1ddoE02	E:89-139,E:196-285
1f	1ddoF02	F:89-139,F:196-285
1g	1ddoG02	G:89-139,G:196-285
1h	1ddoH02	H:89-139,H:196-285

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: NAD(P)-binding Rossmann-like Domain (1244)

Pig (Sus scrofa) (21)

2a	1ddoA01	A:1-88,A:140-195,A:286-339
2b	1ddoB01	B:1-88,B:140-195,B:286-339
2c	1ddoC01	C:1-88,C:140-195,C:286-339
2d	1ddoD01	D:1-88,D:140-195,D:286-339
2e	1ddoE01	E:1-88,E:140-195,E:286-339
2f	1ddoF01	F:1-88,F:140-195,F:286-339
2g	1ddoG01	G:1-88,G:140-195,G:286-339
2h	1ddoH01	H:1-88,H:140-195,H:286-339

(no "Pfam Domain" information available for 1DDO)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G,H (OXDA_PIG | P00371)

molecular function
	GO:0003884	D-amino-acid oxidase activity	Catalysis of the reaction: a D-amino acid + H2O + O2 = a 2-oxo acid + NH3 + hydrogen peroxide.
	GO:0071949	FAD binding	Interacting selectively and non-covalently with the oxidized form, FAD, of flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes.
	GO:0048037	cofactor binding	Interacting selectively and non-covalently with a cofactor, a substance that is required for the activity of an enzyme or other protein. Cofactors may be inorganic, such as the metal atoms zinc, iron, and copper in certain forms, or organic, in which case they are referred to as coenzymes. Cofactors may either be bound tightly to active sites or bind loosely with the substrate.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0046983	protein dimerization activity	The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
	GO:0005102	receptor binding	Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
biological process
	GO:0055130	D-alanine catabolic process	The chemical reactions and pathways resulting in the breakdown of D-alanine, the D-enantiomer of the amino acid alanine.
	GO:0046416	D-amino acid metabolic process	The chemical reactions and pathways involving D-amino acids, the D-enantiomers of amino acids.
	GO:0036088	D-serine catabolic process	The chemical reactions and pathways resulting in the breakdown of D-serine, the D-enantiomer of serine, i.e. (2S)-2-amino-3-hydroxypropanoic acid.
	GO:0070178	D-serine metabolic process	The chemical reactions and pathways involving D-serine, the D-enantiomer of serine, i.e. (2R)-2-amino-3-hydroxypropanoic acid.
	GO:0042416	dopamine biosynthetic process	The chemical reactions and pathways resulting in the formation of dopamine, a catecholamine neurotransmitter and a metabolic precursor of noradrenaline and adrenaline.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0006562	proline catabolic process	The chemical reactions and pathways resulting in the breakdown of proline (pyrrolidine-2-carboxylic acid), a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins.
cellular component
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0005741	mitochondrial outer membrane	The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope.
	GO:0005778	peroxisomal membrane	The lipid bilayer surrounding a peroxisome.
	GO:0005777	peroxisome	A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism.

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	Cis Peptide Bonds
		Thr A:40 - Pro A:41	[ RasMol ]
		Thr B:40 - Pro B:41	[ RasMol ]
		Thr C:40 - Pro C:41	[ RasMol ]
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	1ddo
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
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	OXDA_PIG \| P00371
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		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

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	1.4.3.3
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

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	(no 'MIM ID' available)
		Disease Information	:	OMIM

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		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
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	OXDA_PIG \| P00371
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

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	OXDA_PIG \| P00371	:	1an9 1dao 1evi 1kif 1ve9 3wgt 4yjd 4yjf 4yjg 4yjh

(no "Related Entries Specified in the PDB File" available for 1DDO)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 18)

Sites (26, 26)

SS Bonds (0, 0)

Cis Peptide Bonds (8, 8)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 8)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (2, 16)

CATH Domains (2, 16)

Pfam Domains (0, 0)

Gene Ontology (17, 17)

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Databases

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File