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(-)Theoretical Model
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Theoretical Model  (Jmol Viewer)

(-) Description

Title :  HOMOLOGY MODEL OF ADH GG WITH ISO-URSODEOXYCHOLIC ACID
 
Authors :  H. U. Marschall, U. C. Oppermann, S. Svensson, E. Nordling, B. Persson, J. O. Hoog, H. Jornvall
Date :  09 Nov 99  (Deposition) - 19 Nov 99  (Release) - 23 May 00  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A,B,_#
( #:   chains that contain no standard or modified protein/DNA/RNA residue)
 
Keywords :  Gamma Gamma Alcohol Dehydrogenase, Iso-Ursodeoxycholic Acid (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. U. Marschall, U. C. Oppermann, S. Svensson, E. Nordling, B. Persson, J. O. Hoog, H. Jornvall
Human Liver Class I Alcohol Dehydrogenase Gammagamma Isozyme: The Sole Cytosolic 3Beta-Hydroxysteroid Dehydrogenase Of Iso Bile Acids.
Hepatology V. 31 990 2000
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ALCOHOL DEHYDROGENASE
    Chains: A, B
    EC Number: 1.1.1.1
    Organ: LIVER
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS

 Structural Features

(-) Chains, Units

  
Theoretical Model : 
( #:   chains that contain no standard or modified protein/DNA/RNA residue)
 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 7)

Theoretical Model (3, 7)
No.NameCountTypeFull Name
1IU51Ligand/IonISO-URSODEOXYCHOLIC ACID
2NAD2Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
3ZN4Ligand/IonZINC ION

(-) Sites  (0, 0)

(no "Site" information available for 1DDA)

(-) SS Bonds  (1, 1)

Theoretical Model
No.Residues
1A:195 -A:211

(-) Cis Peptide Bonds  (2, 2)

Theoretical Model
No.Residues
1Leu A:61 -Pro A:62
2Leu B:61 -Pro B:62

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (5, 10)

Theoretical Model (5, 10)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_023992R48HADH1G_HUMANPolymorphism35385902A/BR47H
2UniProtVAR_023993P166SADH1G_HUMANPolymorphism34195308A/BP165S
3UniProtVAR_000428R272QADH1G_HUMANPolymorphism1693482A/BQ271Q
4UniProtVAR_000429I350VADH1G_HUMANPolymorphism698A/BV349V
5UniProtVAR_023994P352TADH1G_HUMANPolymorphism35719513A/BP351T
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 2)

Theoretical Model (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ADH_ZINCPS00059 Zinc-containing alcohol dehydrogenases signature.ADH1G_HUMAN67-81
 		  2A:66-80
B:66-80

(-) Exons   (0, 0)

(no "Exon" information available for 1DDA)

(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:374
 aligned with ADH1G_HUMAN | P00326 from UniProtKB/Swiss-Prot  Length:375

    Alignment length:374
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371    
          ADH1G_HUMAN     2 STAGKVIKCKAAVLWELKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDEHVVSGNLVTPLPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRICKNPESNYCLKNDLGNPRGTLQDGTRRFTCSGKPIHHFVGVSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTPGSTCAVFGLGGVGLSVVMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPDSQNLSINPMLLLTGRTWKGAIFGGFKSKESVPKLVADFMAKKFSLDALITNILPFEKINEGFDLLRSGKSIRTVLTF 375
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeee.......eeeeeee......eeeeeeeeee.hhhhhhhhhh.......ee....eeeeeeee...........eeee........hhhhhh........................eee..eee...........eeeee...eee.....hhhhhhhhhhhhhhhhhhhhh........eeeee..hhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhh...eeehhhhh..hhhhhhhhhh.....eeee...hhhhhhhhhhhh.....eeee.........eee.hhhhhh..eeee.hhhhhhhhhhhhhhhhhhhh....hhh.eeeeee..hhhhhhhhhhhh...eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------H---------------------------------------------------------------------------------------------------------------------S---------------------------------------------------------------------------------------------------------Q-----------------------------------------------------------------------------V-T----------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------ADH_ZINC       ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1dda A   1 STAGKVIKCKAAVLWELKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDEHVVSGNLVTPLPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRICKNPESNYCLKNDLGNPRGTLQDGTRRFTCSGKPIHHFVGVSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTPGSTCAVFGLGGVGLSVVMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVLKEMTDGGVDFSFEVIGQLDTMMASLLCCHEACGTSVIVGVPPDSQNLSINPMLLLTGRTWKGAIFGGFKSKESVPKLVADFMAKKFSLDALITNVLPFEKINEGFDLLRSGKSIRTVLTF 374
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370    


Chain B from PDB  Type:PROTEIN  Length:374
 aligned with ADH1G_HUMAN | P00326 from UniProtKB/Swiss-Prot  Length:375

    Alignment length:374
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371    
          ADH1G_HUMAN     2 STAGKVIKCKAAVLWELKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDEHVVSGNLVTPLPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRICKNPESNYCLKNDLGNPRGTLQDGTRRFTCSGKPIHHFVGVSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTPGSTCAVFGLGGVGLSVVMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPDSQNLSINPMLLLTGRTWKGAIFGGFKSKESVPKLVADFMAKKFSLDALITNILPFEKINEGFDLLRSGKSIRTVLTF 375
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeee.......eeeeeee......eeeeeeeeee.hhhhhhhhhh.......ee....eeeeeeee...........eeee........hhhhhh........................eee..eee...........eeeee...eee.....hhhhhhhhhhhhhhhhhhhhh........eeeee..hhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhh...eee.......hhhhhhhhhh.....eeee...hhhhhhhhhhhh.....eeee.........eee.hhhhhh..eeee.hhhhhhhhhhhhhhhhhhhh....hhh.eeeeee..hhhhhhhhhhhh...eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------H---------------------------------------------------------------------------------------------------------------------S---------------------------------------------------------------------------------------------------------Q-----------------------------------------------------------------------------V-T----------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------ADH_ZINC       ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1dda B   1 STAGKVIKCKAAVLWELKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDEHVVSGNLVTPLPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRICKNPESNYCLKNDLGNPRGTLQDGTRRFTCSGKPIHHFVGVSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTPGSTCAVFGLGGVGLSVVMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVLKEMTDGGVDFSFEVIGQLDTMMASLLCCHEACGTSVIVGVPPDSQNLSINPMLLLTGRTWKGAIFGGFKSKESVPKLVADFMAKKFSLDALITNVLPFEKINEGFDLLRSGKSIRTVLTF 374
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1DDA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1DDA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1DDA)

(-) Gene Ontology  (10, 10)

Theoretical Model(hide GO term definitions)
Chain A,B   (ADH1G_HUMAN | P00326)
molecular function
    GO:0004022    alcohol dehydrogenase (NAD) activity    Catalysis of the reaction: an alcohol + NAD+ = an aldehyde or ketone + NADH + H+.
    GO:0004024    alcohol dehydrogenase activity, zinc-dependent    Catalysis of the reaction: an alcohol + NAD+ = an aldehyde or ketone + NADH + H+, requiring the presence of zinc.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0004745    retinol dehydrogenase activity    Catalysis of the reaction: retinol + NAD+ = retinal + NADH + H+.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0006069    ethanol oxidation    An ethanol metabolic process in which ethanol is converted to acetyl-CoA via acetaldehyde and acetate.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

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 Related Entries

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        ADH1G_HUMAN | P00326: 1ht0 1u3w

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