1DD5 - JenaLib

Title :   CRYSTAL STRUCTURE OF THERMOTOGA MARITIMA RIBOSOME RECYCLING FACTOR, RRF

Authors :   M. Selmer, S. Al-Karadaghi, G. Hirokawa, A. Kaji, A. Liljas

Date :   08 Nov 99 (Deposition) - 22 Dec 99 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.55

Chains :   Asym./Biol. Unit : A

Keywords :   Three-Helix Bundle, Beta-Alpha-Beta Sandwich, Ribosome (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Selmer, S. Al-Karadaghi, G. Hirokawa, A. Kaji, A. Liljas
Crystal Structure Of Thermotoga Maritima Ribosome Recycling Factor: A Trna Mimic.
Science V. 286 2349 1999
PubMed-ID: 10600747 | Reference-DOI: 10.1126/SCIENCE.286.5448.2349
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 2)

Sites (2, 2)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:184
 aligned with RRF_THEMA | Q9X1B9 from UniProtKB/Swiss-Prot  Length:185

    Alignment length:184
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181    
            RRF_THEMA     2 VNPFIKEAKEKMKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISEERTLVIKPWDKSVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGKIAIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKLDEVFEIKKEEIMEF 185
               SCOP domains d1dd5a_ A: Ribosome recycling factor, RRF                                                                                                                                                SCOP domains
               CATH domains 1dd5A01 A:2-30,A:106-185     1dd5A02 A:31-105  [code=3.30.1360.40, no name defined]                     1dd5A01 A:2-30,A:106-185  [code=1.10.132.20, no name defined]                    CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhh..eeee..eeee....eeeee....eeeeee...hhhhhhhhhhhhh......ee....eeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1dd5 A   2 VNPFIKEAKEKMKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISEERTLVIKPWDKSVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGKIAIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKLDEVFEIKKEEIMEF 185
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181

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Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (2, 2)

Pfam Domains (0, 0)

Gene Ontology (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (RRF_THEMA | Q9X1B9)

molecular function
	GO:0043023	ribosomal large subunit binding	Interacting selectively and non-covalently with any part of the larger ribosomal subunit.
biological process
	GO:0002184	cytoplasmic translational termination	The process resulting in the release of a polypeptide chain from the ribosome in the cytoplasm, usually in response to a termination codon.
	GO:0006412	translation	The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
	GO:0006415	translational termination	The process resulting in the release of a polypeptide chain from the ribosome, usually in response to a termination codon (UAA, UAG, or UGA in the universal genetic code).
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

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