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(-) Description

Title :  ANALOG OF DICKERSON-DREW DNA DODECAMER WITH 6'-ALPHA-METHYL CARBOCYCLIC THYMIDINES, NMR, MINIMIZED AVERAGE STRUCTURE
 
Authors :  A. Denisov, S. Bekiroglu, T. Maltseva, A. Sandstrom, K. -H. Altmann, M. Egli, J. Chattopadhyaya
Date :  21 Jan 98  (Deposition) - 27 May 98  (Release) - 15 Sep 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B
Keywords :  Dna, Carbocyclic, Dodecamer, Deoxyribonucleic Acid, Nmr, Minimized Average Structure (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Y. Denisov, E. V. Zamaratski, T. V. Maltseva, A. Sandstrom, S. Bekiroglu, K. H. Altmann, M. Egli, J. Chattopadhyaya
The Solution Conformation Of A Carbocyclic Analog Of The Dickerson-Drew Dodecamer: Comparison With Its Own X-Ray Structure And That Of The Nmr Structure Of The Native Counterpart.
J. Biomol. Struct. Dyn. V. 16 547 1998
PubMed-ID: 10052613
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA (5'-D(*CP*GP*CP*GP*AP*AP*(T32)P*(T32) P*CP*GP*CP*G)-3')
    Chains: A, B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  
NMR Structure : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

NMR Structure (1, 4)
No.NameCountTypeFull Name
1T324Mod. Nucleotide6'-ALPHA-METHYL CARBOCYCLIC THYMIDINE 5'-MONOPHOSPHATE

(-) Sites  (0, 0)

(no "Site" information available for 1DAU)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1DAU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1DAU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1DAU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1DAU)

(-) Exons   (0, 0)

(no "Exon" information available for 1DAU)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:12
                                           
                  1dau A  1 CGCGAAttCGCG 12
                                  ||10  
                                  7-T32 
                                   8-T32


Chain B from PDB  Type:DNA  Length:12
                                           
                  1dau B 13 CGCGAAttCGCG 24
                                  ||22  
                                 19-T32 
                                  20-T32
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1DAU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1DAU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1DAU)

(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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2dau MINIMIZED AVERAGE STRUCTURE