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(-) Description

Title :  SOLUTION STRUCTURE OF A DNA DUPLEX CONTAINING THE CIS-PT(NH3)2[D(-GTG-)-N7-(G)-N7(G)N7(G)]ADDUCT AS DETERMINED WITH HIGH FIELD NMR AND MOLECULAR MECHANICS/DYNAMICS
 
Authors :  C. J. Van Garderen, L. P. A. Van Houte
Date :  13 Jan 93  (Deposition) - 31 Jan 94  (Release) - 13 Jul 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (2x)
NMR Structure *:  A,B  (1x)
Keywords :  Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. J. Van Garderen, L. P. Van Houte
The Solution Structure Of A Dna Duplex Containing The Cis-Pt(Nh3)2[D(-Gtg-)-N7(G), N7(G)] Adduct, As Determined With High-Field Nmr And Molecular Mechanics/Dynamics.
Eur. J. Biochem. V. 225 1169 1994
PubMed-ID: 7957208  |  Reference-DOI: 10.1111/J.1432-1033.1994.1169B.X

(-) Compounds

Molecule 1 - DNA (5'-D(P*CP*TP*CP*TP*AP*GP*TP*GP*CP*TP*CP*AP*C)-3')
    ChainsA
    EngineeredYES
    SyntheticYES
 
Molecule 2 - DNA (5'-D(P*GP*TP*GP*AP*GP*CP*AP*CP*TP*AP*GP*AP*G)-3')
    ChainsB
    EngineeredYES
    SyntheticYES

 Structural Features

(-) Chains, Units

  12
NMR Structure (2x)AB
NMR Structure * (1x)AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1CPT1Ligand/IonCISPLATIN
NMR Structure * (1, 1)
No.NameCountTypeFull Name
1CPT1Ligand/IonCISPLATIN

(-) Sites  (1, 1)

NMR Structure (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDG A:6 , DG A:8BINDING SITE FOR RESIDUE CPT A 14

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1DA5)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1DA5)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1DA5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1DA5)

(-) Exons   (0, 0)

(no "Exon" information available for 1DA5)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:13
                                            
                  1da5 A  1 CTCTAGTGCTCAC 13
                                    10   

Chain B from PDB  Type:DNA  Length:13
                                            
                  1da5 B 14 GTGAGCACTAGAG 26
                                    23   

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1DA5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1DA5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1DA5)

(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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