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Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   HUMAN GLUCOSAMINE-6-PHOSPHATE DEAMINASE ISOMERASE AT 1.75 A RESOLUTION COMPLEXED WITH N-ACETYL-GLUCOSAMINE-6-PHOSPHATE AND 2-DEOXY-2-AMINO-GLUCITOL-6-PHOSPHATE

Authors :   R. Arreola, B. Valderrama, M. L. Morante, E. Horjales

Date :   10 Dec 02 (Deposition) - 23 Sep 03 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.75

Chains :   Asym./Biol. Unit : A,B,C,D,E,F

Keywords :   V-Type Like Allosteric Enzyme, Conformational Disorder, Conformational Differences, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. Arreola, B. Valderrama, M. L. Morante, E. Horjales
Two Mammalian Glucosamine-6-Phosphate Deaminases: A Structural And Genetic Study.
Febs Lett. V. 551 63 2003
PubMed-ID: 12965206 | Reference-DOI: 10.1016/S0014-5793(03)00896-2
(for further references see the PDB file header)

Molecule 1 - GLUCOSAMINE-6-PHOSPHATE ISOMERASE
	Chains	:	A, B, C, D, E, F
	EC Number	:	3.5.99.6
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	GNPI OR HLN OR KIAA0060
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	GLUCOSAMINE-6-PHOSPHATE DEAMINASE, GNPDA, GLCN6P DEAMINASE, OSCILLIN

		1	2	3	4	5	6
Asymmetric/Biological Unit	:	A	B	C	D	E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (4, 31)

No.	Name	Count	Type	Full Name
1	16G	6	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE-6-PHOSPHATE
2	AGP	6	Ligand/Ion	2-DEOXY-2-AMINO GLUCITOL-6-PHOSPHATE
3	GLC	12	Ligand/Ion	ALPHA-D-GLUCOSE
4	SO4	7	Ligand/Ion	SULFATE ION

Asymmetric Unit (31, 31)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLN A:26 , GLC A:295 , HOH A:4317 , HOH A:4328 , HOH A:4401 , HOH A:4574	BINDING SITE FOR RESIDUE GLC A 294
02	AC2	SOFTWARE	PHE A:27 , LYS A:33 , GLC A:294 , HOH A:4328 , HOH A:4349 , HOH A:4356 , HOH A:4557	BINDING SITE FOR RESIDUE GLC A 295
03	AC3	SOFTWARE	MET A:1 , HIS A:262 , HOH A:4325 , SER B:151 , SER B:152 , ARG B:158 , VAL B:159 , LYS B:160 , THR B:161 , HOH B:3299 , HOH B:3379 , HOH B:3410 , HOH B:3436	BINDING SITE FOR RESIDUE 16G B 2299
04	AC4	SOFTWARE	GLN B:26 , GLC B:295 , HOH B:3321 , HOH B:3326 , HOH B:3383 , HOH B:3474 , HOH B:3633	BINDING SITE FOR RESIDUE GLC B 294
05	AC5	SOFTWARE	PHE B:27 , LYS B:33 , GLC B:294 , HOH B:3342 , HOH B:3381 , HOH B:3383 , HOH B:3405	BINDING SITE FOR RESIDUE GLC B 295
06	AC6	SOFTWARE	MET B:1 , HIS B:262 , HOH B:3558 , HOH B:3588 , SER C:151 , SER C:152 , ARG C:158 , VAL C:159 , LYS C:160 , THR C:161 , HOH C:4302 , HOH C:4350 , HOH C:4375 , HOH C:4418 , HOH C:4429 , HOH C:4433 , HOH C:4446 , HOH C:4461	BINDING SITE FOR RESIDUE 16G C 3299
07	AC7	SOFTWARE	GLN C:26 , GLC C:295 , HOH C:4312 , HOH C:4365 , HOH C:4384 , HOH C:4543 , HOH C:4658	BINDING SITE FOR RESIDUE GLC C 294
08	AC8	SOFTWARE	PHE C:27 , LYS C:33 , GLC C:294 , HOH C:4366 , HOH C:4384 , HOH C:4392 , HOH C:4631	BINDING SITE FOR RESIDUE GLC C 295
09	AC9	SOFTWARE	SER A:151 , SER A:152 , ARG A:158 , VAL A:159 , LYS A:160 , THR A:161 , HOH A:4315 , HOH A:4318 , HOH A:4396 , HOH A:4434 , HOH A:4441 , HOH A:4445 , MET C:1 , LYS C:2 , HIS C:262 , HOH C:4612	BINDING SITE FOR RESIDUE 16G A 4299
10	BC1	SOFTWARE	GLN D:26 , GLC D:295 , HOH D:7330 , HOH D:7337 , HOH D:7356 , HOH D:7606	BINDING SITE FOR RESIDUE GLC D 294
11	BC2	SOFTWARE	PHE D:27 , LYS D:33 , GLC D:294 , HOH D:7448 , HOH D:7459 , HOH D:7594	BINDING SITE FOR RESIDUE GLC D 295
12	BC3	SOFTWARE	MET D:1 , HIS D:262 , SER E:151 , SER E:152 , ARG E:158 , VAL E:159 , LYS E:160 , THR E:161 , HOH E:6299 , HOH E:6320 , HOH E:6351 , HOH E:6376 , HOH E:6385 , HOH E:6423 , HOH E:6481	BINDING SITE FOR RESIDUE 16G E 5299
13	BC4	SOFTWARE	GLN E:26 , GLC E:295 , HOH E:6328 , HOH E:6361 , HOH E:6388 , HOH E:6436 , HOH E:6503	BINDING SITE FOR RESIDUE GLC E 294
14	BC5	SOFTWARE	PHE E:27 , LYS E:33 , GLC E:294 , HOH E:6358 , HOH E:6388 , HOH E:6403 , HOH E:6422	BINDING SITE FOR RESIDUE GLC E 295
15	BC6	SOFTWARE	MET E:1 , LYS E:2 , HIS E:262 , HOH E:6312 , HOH E:6472 , HOH E:6568 , SER F:151 , SER F:152 , ARG F:158 , VAL F:159 , LYS F:160 , THR F:161 , HOH F:7312 , HOH F:7343 , HOH F:7373 , HOH F:7426 , HOH F:7463 , HOH F:7510	BINDING SITE FOR RESIDUE 16G F 6299
16	BC7	SOFTWARE	GLN F:26 , GLC F:295 , HOH F:7345 , HOH F:7350 , HOH F:7371 , HOH F:7634	BINDING SITE FOR RESIDUE GLC F 294
17	BC8	SOFTWARE	PHE F:27 , LYS F:33 , GLC F:294 , HOH F:7345 , HOH F:7388 , HOH F:7437 , HOH F:7478 , HOH F:7650	BINDING SITE FOR RESIDUE GLC F 295
18	BC9	SOFTWARE	VAL C:112 , SER D:151 , SER D:152 , ARG D:158 , VAL D:159 , LYS D:160 , THR D:161 , MET D:184 , HOH D:7304 , HOH D:7339 , HOH D:7352 , HOH D:7385 , HOH D:7395 , HOH D:7401 , HOH D:7404 , MET F:1 , LYS F:2 , HIS F:262 , HOH F:7302 , HOH F:7391 , HOH F:7627	BINDING SITE FOR RESIDUE 16G D 7299
19	CC1	SOFTWARE	GLY A:42 , SER A:43 , THR A:44 , ARG A:172 , LYS A:208 , AGP A:2298 , HOH A:4421 , HOH A:4588	BINDING SITE FOR RESIDUE SO4 A 2296
20	CC2	SOFTWARE	GLY B:42 , SER B:43 , THR B:44 , PRO B:45 , LYS B:208 , AGP B:3298 , HOH B:3515 , HOH B:3567 , HOH B:3601	BINDING SITE FOR RESIDUE SO4 B 3296
21	CC3	SOFTWARE	GLY C:42 , SER C:43 , THR C:44 , LYS C:208 , AGP C:4298 , HOH C:4469 , HOH C:4484 , HOH C:4486	BINDING SITE FOR RESIDUE SO4 C 4296
22	CC4	SOFTWARE	LYS A:57 , ARG C:21 , TYR C:55 , ASP C:60 , HOH C:4399 , HOH C:4495 , HOH C:4620	BINDING SITE FOR RESIDUE SO4 C 4297
23	CC5	SOFTWARE	GLY D:42 , SER D:43 , THR D:44 , ARG D:172 , LYS D:208 , AGP D:5298 , HOH D:7457 , HOH D:7583	BINDING SITE FOR RESIDUE SO4 D 5296
24	CC6	SOFTWARE	GLY E:42 , SER E:43 , THR E:44 , LYS E:208 , AGP E:6298 , HOH E:6367 , HOH E:6488 , HOH E:6555	BINDING SITE FOR RESIDUE SO4 E 6296
25	CC7	SOFTWARE	SER F:43 , THR F:44 , LYS F:208 , AGP F:7298 , HOH F:7440 , HOH F:7590 , HOH F:7605 , HOH F:7626 , HOH F:7673	BINDING SITE FOR RESIDUE SO4 F 7296
26	CC8	SOFTWARE	PRO A:40 , THR A:41 , SER A:43 , THR A:44 , MET A:71 , ASP A:72 , GLY A:137 , ILE A:138 , HIS A:143 , ALA A:145 , ARG A:172 , LYS A:208 , SO4 A:2296 , HOH A:4421 , HOH A:4437 , HOH A:4484 , HOH A:4587 , HOH A:4627 , HOH A:4674 , HOH A:4675	BINDING SITE FOR RESIDUE AGP A 2298
27	CC9	SOFTWARE	THR B:41 , GLY B:42 , SER B:43 , THR B:44 , MET B:71 , ASP B:72 , TYR B:85 , GLY B:137 , HIS B:143 , ALA B:145 , PHE B:146 , LYS B:208 , SO4 B:3296 , HOH B:3390 , HOH B:3430 , HOH B:3504 , HOH B:3515 , HOH B:3573 , HOH B:3576 , HOH B:3601	BINDING SITE FOR RESIDUE AGP B 3298
28	DC1	SOFTWARE	GLY C:42 , SER C:43 , THR C:44 , ASP C:72 , TYR C:85 , HIS C:143 , PHE C:146 , ASN C:170 , LYS C:208 , SO4 C:4296 , HOH C:4469 , HOH C:4477 , HOH C:4484 , HOH C:4486 , HOH C:4526	BINDING SITE FOR RESIDUE AGP C 4298
29	DC2	SOFTWARE	THR D:41 , GLY D:42 , SER D:43 , THR D:44 , ASP D:72 , TYR D:85 , GLY D:137 , ILE D:138 , HIS D:143 , ALA D:145 , PHE D:146 , ARG D:172 , LYS D:208 , SO4 D:5296 , HOH D:7332 , HOH D:7425 , HOH D:7428 , HOH D:7457 , HOH D:7462 , HOH D:7583 , HOH D:7586 , HOH D:7662	BINDING SITE FOR RESIDUE AGP D 5298
30	DC3	SOFTWARE	THR E:41 , SER E:43 , THR E:44 , MET E:71 , ASP E:72 , TYR E:85 , GLY E:137 , ILE E:138 , HIS E:143 , ALA E:145 , PHE E:146 , LYS E:208 , SO4 E:6296 , HOH E:6367 , HOH E:6371 , HOH E:6400 , HOH E:6488 , HOH E:6529 , HOH E:6543 , HOH E:6555	BINDING SITE FOR RESIDUE AGP E 6298
31	DC4	SOFTWARE	THR F:41 , THR F:44 , MET F:71 , ASP F:72 , GLY F:137 , ILE F:138 , HIS F:143 , ALA F:145 , LYS F:208 , SO4 F:7296 , HOH F:7322 , HOH F:7389 , HOH F:7440 , HOH F:7441 , HOH F:7590 , HOH F:7598 , HOH F:7605 , HOH F:7626 , HOH F:7673	BINDING SITE FOR RESIDUE AGP F 7298

(no "SS Bond" information available for 1NE7)

Asymmetric/Biological Unit

No.	Residues
1	Asp A:267	-	Pro A:268
2	Asp B:267	-	Pro B:268
3	Asp C:267	-	Pro C:268
4	Asp D:267	-	Pro D:268
5	Asp E:267	-	Pro E:268
6	Asp F:267	-	Pro F:268

(no "SAP(SNP)/Variant" information available for 1NE7)

Asymmetric/Biological Unit (1, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GLC_GALNAC_ISOMERASE	PS01161	Glucosamine/galactosamine-6-phosphate isomerases signature.	GNPI1_HUMAN	125-143	6	A:125-143 B:125-143 C:125-143 D:125-143 E:125-143 F:125-143

Asymmetric/Biological Unit (6, 36)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1c	ENST00000311337	1c	ENSE00001912150	chr5:141392596-141392560	37	GNPI1_HUMAN	-	0	0	-	-
1.1m	ENST00000311337	1m	ENSE00002186228	chr5:141391606-141391477	130	GNPI1_HUMAN	1-42	42	6	A:1-42 B:1-42 C:1-42 D:1-42 E:1-42 F:1-42	42 42 42 42 42 42
1.2	ENST00000311337	2	ENSE00001798580	chr5:141387465-141387364	102	GNPI1_HUMAN	42-76	35	6	A:42-76 B:42-76 C:42-76 D:42-76 E:42-76 F:42-76	35 35 35 35 35 35
1.3a	ENST00000311337	3a	ENSE00000814331	chr5:141385891-141385709	183	GNPI1_HUMAN	76-137	62	6	A:76-137 B:76-137 C:76-137 D:76-137 E:76-137 F:76-137	62 62 62 62 62 62
1.4e	ENST00000311337	4e	ENSE00000814330	chr5:141384681-141384497	185	GNPI1_HUMAN	137-198	62	6	A:137-198 B:137-198 C:137-198 D:137-198 E:137-198 F:137-198	62 62 62 62 62 62
1.5b	ENST00000311337	5b	ENSE00001736194	chr5:141382827-141382653	175	GNPI1_HUMAN	199-257	59	6	A:199-257 B:199-257 C:199-257 D:199-257 E:199-257 F:199-257	59 59 59 59 59 59
1.6f	ENST00000311337	6f	ENSE00001859437	chr5:141381694-141380234	1461	GNPI1_HUMAN	257-289	33	6	A:257-281 B:257-274 C:257-274 D:257-274 E:257-274 F:257-274	25 18 18 18 18 18

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:281
 aligned with GNPI1_HUMAN | P46926 from UniProtKB/Swiss-Prot  Length:289

    Alignment length:281
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280 
          GNPI1_HUMAN     1 MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGDLSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDAFEEKIKAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCDEDATLELKVKTVKYFKGLMLVHNKLVDPLYSIKEKETEKSQ 281
               SCOP domains d1ne7a_ A: Glucosamine 6-phosphate deaminase/isomerase NagB                                                                                                                                                                                                                               SCOP domains
               CATH domains 1ne7A00 A:1-281  [code=3.40.50.1360, no name defined]                                                                                                                                                                                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.hhhhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhhhhh.......eeeee.eee.........hhhhhhhhhhhhhh..hhh.ee.......hhhhhhhhhhhhhhhh....eeee.....................eeee.hhhhhhhhhhhh..hhhhh..eeee.hhhhhhh...eeeee.hhhhhhhhhhhhh......hhhhhhhhh..eeeeee.hhhh..hhhhhhhhhhhhhhhhhhh............... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------GLC_GALNAC_ISOMERAS------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.1m  PDB: A:1-42 UniProt: 1-42      ---------------------------------Exon 1.3a  PDB: A:76-137 UniProt: 76-137                      -------------------------------------------------------------Exon 1.5b  PDB: A:199-257 UniProt: 199-257                 ------------------------ Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------Exon 1.2  PDB: A:42-76             ------------------------------------------------------------Exon 1.4e  PDB: A:137-198 UniProt: 137-198                    ----------------------------------------------------------Exon 1.6f  PDB: A:257-281 Transcript 1 (2)
                 1ne7 A   1 MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGDLSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDAFEEKIKAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCDEDATLELKVKTVKYFKGLMLVHNKLVDPLYSIKEKETEKSQ 281
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280

Chain B from PDB  Type:PROTEIN  Length:274
 aligned with GNPI1_HUMAN | P46926 from UniProtKB/Swiss-Prot  Length:289

    Alignment length:274
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270    
          GNPI1_HUMAN     1 MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGDLSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDAFEEKIKAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCDEDATLELKVKTVKYFKGLMLVHNKLVDPLYSIKE 274
               SCOP domains d1ne7b_ B: Glucosamine 6-phosphate deaminase/isomerase NagB                                                                                                                                                                                                                        SCOP domains
               CATH domains 1ne7B00 B:1-274  [code=3.40.50.1360, no name defined]                                                                                                                                                                                                                              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.hhhhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhhhhh.......eeeee.eee.........hhhhhhhhhhhhhh..hhh.ee.......hhhhhhhhhhhhhhhh....eeee.....................eeee.hhhhhhhhhhhhh.hhhhh..eeee.hhhhhhh...eeeee.hhhhhhhhhhhhh......hhhhhhhhh..eeeeee.hhhh..hhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------GLC_GALNAC_ISOMERAS----------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1m  PDB: B:1-42 UniProt: 1-42      ---------------------------------Exon 1.3a  PDB: B:76-137 UniProt: 76-137                      -------------------------------------------------------------Exon 1.5b  PDB: B:199-257 UniProt: 199-257                 ----------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------Exon 1.2  PDB: B:42-76             ------------------------------------------------------------Exon 1.4e  PDB: B:137-198 UniProt: 137-198                    ----------------------------------------------------------Exon 1.6f          Transcript 1 (2)
                 1ne7 B   1 MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGDLSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDAFEEKIKAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCDEDATLELKVKTVKYFKGLMLVHNKLVDPLYSIKE 274
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270

Chain C from PDB  Type:PROTEIN  Length:274
 aligned with GNPI1_HUMAN | P46926 from UniProtKB/Swiss-Prot  Length:289

    Alignment length:274
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270    
          GNPI1_HUMAN     1 MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGDLSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDAFEEKIKAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCDEDATLELKVKTVKYFKGLMLVHNKLVDPLYSIKE 274
               SCOP domains d1ne7c_ C: Glucosamine 6-phosphate deaminase/isomerase NagB                                                                                                                                                                                                                        SCOP domains
               CATH domains 1ne7C00 C:1-274  [code=3.40.50.1360, no name defined]                                                                                                                                                                                                                              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.hhhhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhhhhh.......eeeee.eee.........hhhhhhhhhhhhhh..hhh.ee.......hhhhhhhhhhhhhhhh....eeee.....................eeee.hhhhhhhhhhhh..hhhhh..eeee.hhhhhhh..eeeeee.hhhhhhhhhhhhh......hhhhhhhhh..eeeeee.hhhh..hhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------GLC_GALNAC_ISOMERAS----------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1m  PDB: C:1-42 UniProt: 1-42      ---------------------------------Exon 1.3a  PDB: C:76-137 UniProt: 76-137                      -------------------------------------------------------------Exon 1.5b  PDB: C:199-257 UniProt: 199-257                 ----------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------Exon 1.2  PDB: C:42-76             ------------------------------------------------------------Exon 1.4e  PDB: C:137-198 UniProt: 137-198                    ----------------------------------------------------------Exon 1.6f          Transcript 1 (2)
                 1ne7 C   1 MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGDLSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDAFEEKIKAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCDEDATLELKVKTVKYFKGLMLVHNKLVDPLYSIKE 274
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270

Chain D from PDB  Type:PROTEIN  Length:274
 aligned with GNPI1_HUMAN | P46926 from UniProtKB/Swiss-Prot  Length:289

    Alignment length:274
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270    
          GNPI1_HUMAN     1 MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGDLSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDAFEEKIKAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCDEDATLELKVKTVKYFKGLMLVHNKLVDPLYSIKE 274
               SCOP domains d1ne7d_ D: Glucosamine 6-phosphate deaminase/isomerase NagB                                                                                                                                                                                                                        SCOP domains
               CATH domains 1ne7D00 D:1-274  [code=3.40.50.1360, no name defined]                                                                                                                                                                                                                              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.hhhhhhhhhhhhhhhhhhhhh......eeeee.....hhhhhhhhhhhhhh.......eeeee.eee.........hhhhhhhhhhhhhh..hhh.ee.......hhhhhhhhhhhhhhhh....eeeee....................eeee.hhhhhhhhhhhh..hhhhh..eeee.hhhhhhh..eeeeee.hhhhhhhhhhhhh......hhhhhhhhh..eeeeee.hhhh..hhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------GLC_GALNAC_ISOMERAS----------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1m  PDB: D:1-42 UniProt: 1-42      ---------------------------------Exon 1.3a  PDB: D:76-137 UniProt: 76-137                      -------------------------------------------------------------Exon 1.5b  PDB: D:199-257 UniProt: 199-257                 ----------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------Exon 1.2  PDB: D:42-76             ------------------------------------------------------------Exon 1.4e  PDB: D:137-198 UniProt: 137-198                    ----------------------------------------------------------Exon 1.6f          Transcript 1 (2)
                 1ne7 D   1 MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGDLSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDAFEEKIKAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCDEDATLELKVKTVKYFKGLMLVHNKLVDPLYSIKE 274
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270

Chain E from PDB  Type:PROTEIN  Length:274
 aligned with GNPI1_HUMAN | P46926 from UniProtKB/Swiss-Prot  Length:289

    Alignment length:274
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270    
          GNPI1_HUMAN     1 MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGDLSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDAFEEKIKAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCDEDATLELKVKTVKYFKGLMLVHNKLVDPLYSIKE 274
               SCOP domains d1ne7e_ E: Glucosamine 6-phosphate deaminase/isomerase NagB                                                                                                                                                                                                                        SCOP domains
               CATH domains 1ne7E00 E:1-274  [code=3.40.50.1360, no name defined]                                                                                                                                                                                                                              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.hhhhhhhhhhhhhhhhhhhhh......eeeee.....hhhhhhhhhhhhhh.......eeeee.eee.........hhhhhhhhhhhhhh..hhh.ee.......hhhhhhhhhhhhhhhh....eeee.....................eeee.hhhhhhhhhhhhh.hhhhh..eeee.hhhhhhh...eeeee.hhhhhhhhhhhhh......hhhhhhhhh..eeeeee.hhhh..hhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------GLC_GALNAC_ISOMERAS----------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1m  PDB: E:1-42 UniProt: 1-42      ---------------------------------Exon 1.3a  PDB: E:76-137 UniProt: 76-137                      -------------------------------------------------------------Exon 1.5b  PDB: E:199-257 UniProt: 199-257                 ----------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------Exon 1.2  PDB: E:42-76             ------------------------------------------------------------Exon 1.4e  PDB: E:137-198 UniProt: 137-198                    ----------------------------------------------------------Exon 1.6f          Transcript 1 (2)
                 1ne7 E   1 MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGDLSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDAFEEKIKAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCDEDATLELKVKTVKYFKGLMLVHNKLVDPLYSIKE 274
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270

Chain F from PDB  Type:PROTEIN  Length:274
 aligned with GNPI1_HUMAN | P46926 from UniProtKB/Swiss-Prot  Length:289

    Alignment length:274
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270    
          GNPI1_HUMAN     1 MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGDLSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDAFEEKIKAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCDEDATLELKVKTVKYFKGLMLVHNKLVDPLYSIKE 274
               SCOP domains d1ne7f_ F: Glucosamine 6-phosphate deaminase/isomerase NagB                                                                                                                                                                                                                        SCOP domains
               CATH domains 1ne7F00 F:1-274  [code=3.40.50.1360, no name defined]                                                                                                                                                                                                                              CATH domains
           Pfam domains (1) ----------Glucosamine_iso-1ne7F01 F:11-217                                                                                                                                                                               --------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) ----------Glucosamine_iso-1ne7F02 F:11-217                                                                                                                                                                               --------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) ----------Glucosamine_iso-1ne7F03 F:11-217                                                                                                                                                                               --------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) ----------Glucosamine_iso-1ne7F04 F:11-217                                                                                                                                                                               --------------------------------------------------------- Pfam domains (4)
           Pfam domains (5) ----------Glucosamine_iso-1ne7F05 F:11-217                                                                                                                                                                               --------------------------------------------------------- Pfam domains (5)
           Pfam domains (6) ----------Glucosamine_iso-1ne7F06 F:11-217                                                                                                                                                                               --------------------------------------------------------- Pfam domains (6)
         Sec.struct. author .eeeee.hhhhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhhhhh.......eeeee.eee.........hhhhhhhhhhhhhh..hhh.ee.......hhhhhhhhhhhhhhhh....eeee.....................eeee.hhhhhhhhhhhh..hhhhh..eeee.hhhhhhh..eeeeee.hhhhhhhhhhhhh......hhhhhhhhh..eeeeee.hhhh..hhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------GLC_GALNAC_ISOMERAS----------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1m  PDB: F:1-42 UniProt: 1-42      ---------------------------------Exon 1.3a  PDB: F:76-137 UniProt: 76-137                      -------------------------------------------------------------Exon 1.5b  PDB: F:199-257 UniProt: 199-257                 ----------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------Exon 1.2  PDB: F:42-76             ------------------------------------------------------------Exon 1.4e  PDB: F:137-198 UniProt: 137-198                    ----------------------------------------------------------Exon 1.6f          Transcript 1 (2)
                 1ne7 F   1 MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGDLSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDAFEEKIKAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCDEDATLELKVKTVKYFKGLMLVHNKLVDPLYSIKE 274
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: NagB/RpiA/CoA transferase-like (94)

Superfamily: NagB/RpiA/CoA transferase-like (94)

Family: NagB-like (14)

Protein domain: Glucosamine 6-phosphate deaminase/isomerase NagB (11)

Human (Homo sapiens) [TaxId: 9606] (1)

1a	d1ne7a_	A:
1b	d1ne7b_	B:
1c	d1ne7c_	C:
1d	d1ne7d_	D:
1e	d1ne7e_	E:
1f	d1ne7f_	F:

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: [code=3.40.50.1360, no name defined] (40)

Human (Homo sapiens) (1)

1a	1ne7B00	B:1-274
1b	1ne7C00	C:1-274
1c	1ne7D00	D:1-274
1d	1ne7E00	E:1-274
1e	1ne7F00	F:1-274
1f	1ne7A00	A:1-281

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: ISOCOT_Fold (53)

Family: Glucosamine_iso (12)

Homo sapiens (Human) (1)

1a	Glucosamine_iso-1ne7F01	F:11-217
1b	Glucosamine_iso-1ne7F02	F:11-217
1c	Glucosamine_iso-1ne7F03	F:11-217
1d	Glucosamine_iso-1ne7F04	F:11-217
1e	Glucosamine_iso-1ne7F05	F:11-217
1f	Glucosamine_iso-1ne7F06	F:11-217

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D,E,F (GNPI1_HUMAN | P46926)

molecular function
	GO:0004342	glucosamine-6-phosphate deaminase activity	Catalysis of the reaction: D-glucosamine 6-phosphate + H(2)O = beta-D-fructose 6-phosphate + NH(4)(+).
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0006044	N-acetylglucosamine metabolic process	The chemical reactions and pathways involving N-acetylglucosamine. The D isomer is a common structural unit of glycoproteins in plants, bacteria and animals; it is often the terminal sugar of an oligosaccharide group of a glycoprotein.
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0006091	generation of precursor metabolites and energy	The chemical reactions and pathways resulting in the formation of precursor metabolites, substances from which energy is derived, and any process involved in the liberation of energy from these substances.
	GO:0006043	glucosamine catabolic process	The chemical reactions and pathways resulting in the breakdown of glucosamine (2-amino-2-deoxyglucopyranose), an aminodeoxysugar that occurs in combined form in chitin.
	GO:0006006	glucose metabolic process	The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides.
	GO:0007338	single fertilization	The union of male and female gametes to form a zygote.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.

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	Cis Peptide Bonds
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	1ne7
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	3.5.99.6
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(no "Entries Sharing at Least One Protein Chain" available for 1NE7)

1dea	E. COLI GLUCOSAMINE-6-PHOSPHATE DEAMINASE-ISOMERASE PHOSPHATE COMPLEX.
1fs5	E. COLI GLUCOSAMINE-6-PHOSPHATE DEAMINASE-ISOMERASE IN COMPLEX WITH N-ACETYL-GLUCOSAMINE-6-PHOSPHATE.
1fs6	GLUCOSAMINE-6-PHOSPHATE DEAMINASE FROM E.COLI, T CONFORMER.
1fsf	GLUCOSAMINE-6-PHOSPHATE DEAMINASE FROM E.COLI, T CONFORMER.
1hor	E. COLI GLUCOSAMINE-6-PHOSPHATE DEAMINASE-ISOMERASE IN COMPLEX WITH PHOSPHATE AND 2-DEOXY-2-AMINO-GLUCITOL-6- PHOSPHATE .
1hot	E. COLI GLUCOSAMINE-6-PHOSPHATE DEAMINASE-ISOMERASE IN COMPLEX WITH PHOSPHATE AND N-ACETYL-GLUCOSAMINE-6-PHOSPHATE.

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 31)

Sites (31, 31)

SS Bonds (0, 0)

Cis Peptide Bonds (6, 6)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 6)

Exons (6, 36)

Sequences/Alignments

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SCOP Domains (1, 6)

CATH Domains (1, 6)

Pfam Domains (1, 6)

Gene Ontology (12, 12)

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