1D1R - JenaLib

Title :   NMR SOLUTION STRUCTURE OF THE PRODUCT OF THE E. COLI YCIH GENE.

Authors :   J. R. Cort, E. V. Koonin, P. A. Bash, M. A. Kennedy

Date :   20 Sep 99 (Deposition) - 06 Oct 99 (Release) - 24 Feb 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (20x)

Keywords :   Alpha-Beta Plait, Open-Faced Beta Sandwich, Ferredoxin-Like Fold, Structural Genomics (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. R. Cort, E. V. Koonin, P. A. Bash, M. A. Kennedy
A Phylogenetic Approach To Target Selection For Structural Genomics: Solution Structure Of Ycih.
Nucleic Acids Res. V. 27 4018 1999
PubMed-ID: 10497266 | Reference-DOI: 10.1093/NAR/27.20.4018
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 1)

Exons (0, 0)

Sequences/Alignments

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:83
 aligned with YCIH_ECOLI | P08245 from UniProtKB/Swiss-Prot  Length:108

    Alignment length:83
                                                                                                          108  
                                    37        47        57        67        77        87        97       107|  
           YCIH_ECOLI    28 KGDGVVRIQRQTSGRKGKGVCLITGVDLDDAELTKLAAELKKKCGCGGAVKDGVIEIQGDKRDLLKSLLEAKGMKVKLAGG--   -
               SCOP domains d1d1ra_ A: YciH                                                                     SCOP domains
               CATH domains 1d1rA00 A:29-111 Translation Initiation Factor Eif1                                 CATH domains
               Pfam domains ----------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee..........eeee....hhhhhhhhhhhhh.............eee...hhhhhhhhhhhhh.ee....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------SUI1  PDB: A:35-101 UniProt: 34-100                                ---------- PROSITE
                 Transcript ----------------------------------------------------------------------------------- Transcript
                 1d1r A  29 KGDGVVRIQRQTSGRKGKGVCLITGVDLDDAELTKLAAELKKKCGCGGAVKDGVIEIQGDKRDLLKSLLEAKGMKVKLAGGLE 111
                                    38        48        58        68        78        88        98       108

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Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (1, 1)

Pfam Domains (0, 0)

Gene Ontology (6, 6)

NMR Structure(hide GO term definitions)

Chain A (YCIH_ECOLI | P08245)

molecular function
	GO:0043022	ribosome binding	Interacting selectively and non-covalently with any part of a ribosome.
	GO:0003743	translation initiation factor activity	Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
biological process
	GO:0006417	regulation of translation	Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA.
	GO:0006412	translation	The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
	GO:0006413	translational initiation	The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA.
cellular component
	GO:0070992	translation initiation complex	A ribonucleoprotein complex that contains a ribosome, mRNA, and initiator tRNA; the functional ribosome is at the AUG, with the methionyl/formyl-methionyl-tRNA positioned at the P site.

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