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(-) Description

Title :  SOLUTION STRUCTURE OF ANDROCTONIN
 
Authors :  N. Mandard, F. Vovelle
Date :  01 Sep 99  (Deposition) - 12 Jan 00  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Peptide, Beta Sheet, Toxin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Mandard, D. Sy, C. Maufrais, J. M. Bonmatin, P. Bulet, C. Hetru, F. Vovelle
Androctonin, A Novel Antimicrobial Peptide From Scorpion Androctonus Australis: Solution Structure And Molecular Dynamics Simulations In The Presence Of A Lipid Monolayer.
J. Biomol. Struct. Dyn. V. 17 367 1999
PubMed-ID: 10563585
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTEIN (ANDROCTONIN)
    Chains: A
    Organism Common: SAHARA SCORPION
    Organism Scientific: ANDROCTONUS AUSTRALIS
    Organism Taxid: 6858
    Other Details: SYNTHETIC
    Other Details - Source: ANDROCTONUS

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1CZ6)

(-) Sites  (0, 0)

(no "Site" information available for 1CZ6)

(-) SS Bonds  (2, 2)

NMR Structure
No.Residues
1A:4 -A:20
2A:10 -A:16

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1CZ6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1CZ6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1CZ6)

(-) Exons   (0, 0)

(no "Exon" information available for 1CZ6)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:25
 aligned with ANDT_ANDAU | P56684 from UniProtKB/Swiss-Prot  Length:25

    Alignment length:25
                                    10        20     
            ANDT_ANDAU    1 RSVCRQIKICRRRGGCYYKCTNRPY 25
               SCOP domains d1cz6a_ A: Androctonin    SCOP domains
               CATH domains ------------------------- CATH domains
               Pfam domains ------------------------- Pfam domains
         Sec.struct. author .....eeee.......eeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------- SAPs(SNPs)
                    PROSITE ------------------------- PROSITE
                 Transcript ------------------------- Transcript
                  1cz6 A  1 RSVCRQIKICRRRGGCYYKCTNRPY 25
                                    10        20
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Peptides (792)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1CZ6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1CZ6)

(-) Gene Ontology  (4, 4)

NMR Structure(hide GO term definitions)
Chain A   (ANDT_ANDAU | P56684)
biological process
    GO:0042742    defense response to bacterium    Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
    GO:0050832    defense response to fungus    Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.
    GO:0031640    killing of cells of other organism    Any process in an organism that results in the killing of cells of another organism, including in some cases the death of the other organism. Killing here refers to the induction of death in one cell by another cell, not cell-autonomous death due to internal or other environmental conditions.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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