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(-) Description

Title :  REDUCED RUSTICYANIN, NMR
 
Authors :  M. V. Botuyan, H. J. Dyson
Date :  19 Apr 96  (Deposition) - 08 Nov 96  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (15x)
Keywords :  Rusticyanin, Type 1 Copper Protein, Solution Structure, Electron Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. V. Botuyan, A. Toy-Palmer, J. Chung, R. C. Blake 2Nd. , P. Beroza, D. A. Case, H. J. Dyson
Nmr Solution Structure Of Cu(I) Rusticyanin From Thiobacillus Ferrooxidans: Structural Basis For The Extreme Acid Stability And Redox Potential.
J. Mol. Biol. V. 263 752 1996
PubMed-ID: 8947573  |  Reference-DOI: 10.1006/JMBI.1996.0613
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CU(I) RUSTICYANIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Organism Scientific: ACIDITHIOBACILLUS FERROOXIDANS
    Organism Taxid: 920
    Other Details: PART OF NMR DATA ACQUIRED WITH LABELED NATIVE MATERIAL FROM THIOBACILLUS FERROOXIDANS, AND PART WITH RECOMBINANT MATERIAL FROM ESCHERICHIA COLI
    Synonym: REDUCED RUSTICYANIN

 Structural Features

(-) Chains, Units

  
NMR Structure (15x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1CU1Ligand/IonCOPPER (II) ION

(-) Sites  (1, 1)

NMR Structure (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:85 , CYS A:138 , HIS A:143 , MET A:148BINDING SITE FOR RESIDUE CU A 156

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1CUR)

(-) Cis Peptide Bonds  (3, 35)

NMR Structure
No.ModelResidues
11, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15Phe A:51 -Pro A:52
21, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15Pro A:94 -Pro A:95
34, 6, 7, 11, 14Asp A:103 -Pro A:104

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1CUR)

(-) PROSITE Motifs  (2, 2)

NMR Structure (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1COPPER_BLUEPS00196 Type-1 copper (blue) proteins signature.RUS_ACIF2163-180  1A:131-148
RUS2_ACIFR163-180  1A:131-148
2MULTICOPPER_OXIDASE1PS00079 Multicopper oxidases signature 1.RUS_ACIF2164-184  1A:132-152
RUS2_ACIFR164-184  1A:132-152

(-) Exons   (0, 0)

(no "Exon" information available for 1CUR)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:155
 aligned with RUS2_ACIFR | P0C918 from UniProtKB/Swiss-Prot  Length:187

    Alignment length:155
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182     
           RUS2_ACIFR    33 GTLDSTWKEATLPQVKAMLEKDTGKVSGDTVTYSGKTVHVVAAAVLPGFPFPSFEVHDKKNPTLEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWHPTAGTYYYVCQIPGHAATGMFGKIIVK 187
               SCOP domains d1cura_ A: Rusticyanin                                                                                                                                      SCOP domains
               CATH domains 1curA00 A:1-155 Cupredoxins -  blue copper proteins                                                                                                         CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eee.hhhhhhhhhh..eeeeeeeeee...eeeeeeee........eeeeeeeee.eeee...eeeeeeeee.....eeeeeee................eee.........eeeeeeeeee....eeeeee...hhhhhh.eeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------------------------------COPPER_BLUE       ------- PROSITE (2)
                PROSITE (3) ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) -----------------------------------------------------------------------------------------------------------------------------------MULTICOPPER_OXIDASE1 --- PROSITE (4)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1cur A   1 GTLDTTWKEATLPQVKAMLEKDTGKVSGDTVTYSGKTVHVVAAAVLPGFPFPSFEVHDKKNPTLEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWHPTAGTYYYVCQIPGHAATGMFGKIVVK 155
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150     


Chain A from PDB  Type:PROTEIN  Length:155
 aligned with RUS_ACIF2 | B7JAQ0 from UniProtKB/Swiss-Prot  Length:187

    Alignment length:155
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182     
            RUS_ACIF2    33 GTLDTTWKEATLPQVKAMLEKDTGKVSGDTVTYSGKTVHVVAAAVLPGFPFPSFEVHDKKNPTLEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWHPTAGTYYYVCQIPGHAATGMFGKIVVK 187
               SCOP domains d1cura_ A: Rusticyanin                                                                                                                                      SCOP domains
               CATH domains 1curA00 A:1-155 Cupredoxins -  blue copper proteins                                                                                                         CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eee.hhhhhhhhhh..eeeeeeeeee...eeeeeeee........eeeeeeeee.eeee...eeeeeeeee.....eeeeeee................eee.........eeeeeeeeee....eeeeee...hhhhhh.eeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------------------------------------------------------------------------------------------------------------------------COPPER_BLUE       ------- PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -----------------------------------------------------------------------------------------------------------------------------------MULTICOPPER_OXIDASE1 --- PROSITE (3)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1cur A   1 GTLDTTWKEATLPQVKAMLEKDTGKVSGDTVTYSGKTVHVVAAAVLPGFPFPSFEVHDKKNPTLEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWHPTAGTYYYVCQIPGHAATGMFGKIVVK 155
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1CUR)

(-) Gene Ontology  (5, 10)

NMR Structure(hide GO term definitions)
Chain A   (RUS2_ACIFR | P0C918)
molecular function
    GO:0005507    copper ion binding    Interacting selectively and non-covalently with copper (Cu) ions.
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0042597    periplasmic space    The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

Chain A   (RUS_ACIF2 | B7JAQ0)
molecular function
    GO:0005507    copper ion binding    Interacting selectively and non-covalently with copper (Cu) ions.
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0042597    periplasmic space    The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RUS2_ACIFR | P0C918: 1a3z 1a8z 1e30 1gy1 1gy2 1rcy 2cak 2cal
        RUS_ACIF2 | B7JAQ0: 1a3z 1a8z 1e30 1gy1 1gy2 1rcy 2cak 2cal

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1CUR)