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(-) Description

Title :  SYNTHETIC DNA HAIRPIN WITH STILBENEDIETHER LINKER
 
Authors :  F. D. Lewis, X. Liu, Y. Wu, S. E. Miller, M. R. Wasielewski, R. L. Letsinger, R. Sanishvili, A. Joachimiak, V. Tereshko, M. Egli
Date :  17 Aug 99  (Deposition) - 19 Oct 01  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Dna Hairpin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. D. Lewis, X. Liu, Y. Wu, S. E. Miller, M. R. Wasielewski, R. L. Letsinger, R. Sanishvili, A. Joachimiak, V. Tereshko, M. Egli
Structure And Photoinduced Electron Transfer In Exceptionally Stable Synthetic Dna Hairpins With Stilbenediether Linkers
J. Am. Chem. Soc. V. 121 9905 1999
PubMed: search  |  Reference-DOI: 10.1021/JA991934U
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'-D(GP*(BRU)P*TP*TP*TP*GP*(S02) *CP*AP*AP*AP*AP*C)-3'
    Chains: A, B, C, D
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 12)

Asymmetric Unit (3, 12)
No.NameCountTypeFull Name
1BRU4Mod. Nucleotide5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
2S024Mod. NucleotidePHOSPHORIC ACID MONO-[2-(4-{2-[4-(2-HYDROXY-ETHOXY)-CYCLOHEXYLIDENE]-ETHYLIDENE}-CYCLOHEXYLOXY) -ETHYL]ESTER
3SR4Ligand/IonSTRONTIUM ION
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1BRU1Mod. Nucleotide5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
2S021Mod. NucleotidePHOSPHORIC ACID MONO-[2-(4-{2-[4-(2-HYDROXY-ETHOXY)-CYCLOHEXYLIDENE]-ETHYLIDENE}-CYCLOHEXYLOXY) -ETHYL]ESTER
3SR-1Ligand/IonSTRONTIUM ION
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1BRU1Mod. Nucleotide5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
2S021Mod. NucleotidePHOSPHORIC ACID MONO-[2-(4-{2-[4-(2-HYDROXY-ETHOXY)-CYCLOHEXYLIDENE]-ETHYLIDENE}-CYCLOHEXYLOXY) -ETHYL]ESTER
3SR-1Ligand/IonSTRONTIUM ION
Biological Unit 3 (2, 2)
No.NameCountTypeFull Name
1BRU1Mod. Nucleotide5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
2S021Mod. NucleotidePHOSPHORIC ACID MONO-[2-(4-{2-[4-(2-HYDROXY-ETHOXY)-CYCLOHEXYLIDENE]-ETHYLIDENE}-CYCLOHEXYLOXY) -ETHYL]ESTER
3SR-1Ligand/IonSTRONTIUM ION
Biological Unit 4 (2, 2)
No.NameCountTypeFull Name
1BRU1Mod. Nucleotide5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
2S021Mod. NucleotidePHOSPHORIC ACID MONO-[2-(4-{2-[4-(2-HYDROXY-ETHOXY)-CYCLOHEXYLIDENE]-ETHYLIDENE}-CYCLOHEXYLOXY) -ETHYL]ESTER
3SR-1Ligand/IonSTRONTIUM ION

(-) Sites  (0, 0)

(no "Site" information available for 1CS7)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1CS7)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 1CS7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:DNA  Length:13
                                             
                 1cs7 A   1 GuTTTGxCAAAAC  14
                             |    ||11   
                             |    ||     
                             2-BRU||     
                                  7-S02  
                                   9     


Chain B from PDB  Type:DNA  Length:13
                                             
                 1cs7 B 101 GuTTTGxCAAAAC 114
                             |    |111   
                             |    ||     
                           102-BRU||     
                                107-S02  
                                 109     


Chain C from PDB  Type:DNA  Length:13
                                             
                 1cs7 C 201 GuTTTGxCAAAAC 214
                             |    |211   
                             |    ||     
                           202-BRU||     
                                207-S02  
                                 209     


Chain D from PDB  Type:DNA  Length:13
                                             
                 1cs7 D 301 GuTTTGxCAAAAC 314
                             |    |311   
                             |    ||     
                           302-BRU||     
                                307-S02  
                                 309
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1CS7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1CS7)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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