1CP8 - JenaLib

Title :   NMR STRUCTURE OF DNA (5'-D(TTGGCCAA)2-3') COMPLEXED WITH NOVEL ANTITUMOR DRUG UCH9

Authors :   R. Katahira, M. Katahira, Y. Yamashita, H. Ogawa, Y. Kyogoku, M. Yoshida

Date :   11 Jun 99 (Deposition) - 01 Jul 99 (Release) - 24 Feb 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A,B

Keywords :   Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. Katahira, M. Katahira, Y. Yamashita, H. Ogawa, Y. Kyogoku, M. Yoshida
Solution Structure Of The Novel Antitumor Drug Uch9 Complexed With D(Ttggccaa)2 As Determined By Nmr.
Nucleic Acids Res. V. 26 744 1998
PubMed-ID: 9443966 | Reference-DOI: 10.1093/NAR/26.3.744
(for further references see the PDB file header)

Compounds

*Molecule 1 - DNA (5'-D(PTPTPGPGPCPCPAPA)-3')*
	Chains	:	A, B
	Engineered	:	YES
	Other Details	:	TWO MOLECULES OF THE DRUG UCH9 (DDA-DXA-DDA- DDL-DRI-DDA) BOUND IN THE MINOR GROOVE THE MODEL CONTAINS TWO MOLECULES OF UCH9 AND ONE MG CATION WHICH IS COORDINATED TO TWO UCH9 MOLECULES. IN THIS ENTRY UCH9 IS PRESENTED AS HET GROUP, DDA-DXA-DDA-DDL-DRI-DDA. THESE GROUPS ARE NUMBERED 1-6 FOR ONE UCH9 AND 7-12 FOR THE OTHER UCH9.
	Synthetic	:	YES

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 13)

NMR Structure (5, 13)

No.	Name	Count	Type	Full Name
1	DDA	6	Ligand/Ion	2,6-DIDEOXY-BETA-D-GLUCOSE
2	DDL	2	Ligand/Ion	2,6-DIDEOXY-BETA-D-GALACTOSE
3	DRI	2	Ligand/Ion	4-O-METHYL-2,6-DIDEOXY-BETA-D-GLUCOSE
4	DXA	2	Ligand/Ion	1,2-HYDRO-1-OXY-3,4-HYDRO-3-(1-METHOXY-2-OXY-3,4-DIHYDROXYPENTYL)-8,9-DIHYDROXY-7-(SEC-BUTYL)-ANTHRACENE
5	MG	1	Ligand/Ion	MAGNESIUM ION

Sites (13, 13)

NMR Structure (13, 13)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	DC B:6 , DDL B:10 , DXA B:15	BINDING SITE FOR RESIDUE DDA B 9
02	AC2	SOFTWARE	DDA A:13 , DA B:7 , DDA B:9 , DRI B:11	BINDING SITE FOR RESIDUE DDL B 10
03	AC3	SOFTWARE	DDA A:13 , DXA A:14 , DA B:8 , DDL B:10 , DDA B:12	BINDING SITE FOR RESIDUE DRI B 11
04	AC4	SOFTWARE	DT A:2 , DA B:7 , DA B:8 , DRI B:11	BINDING SITE FOR RESIDUE DDA B 12
05	AC5	SOFTWARE	DC A:6 , DDL A:10 , DXA A:14	BINDING SITE FOR RESIDUE DDA A 9
06	AC6	SOFTWARE	DA A:7 , DDA A:9 , DRI A:11 , DDA B:13 , DXA B:15	BINDING SITE FOR RESIDUE DDL A 10
07	AC7	SOFTWARE	DA A:8 , DDL A:10 , DDA A:12 , DDA B:13 , DXA B:15	BINDING SITE FOR RESIDUE DRI A 11
08	AC8	SOFTWARE	DA A:7 , DA A:8 , DRI A:11 , DT B:2	BINDING SITE FOR RESIDUE DDA A 12
09	AC9	SOFTWARE	DDL A:10 , DRI A:11 , DXA B:15	BINDING SITE FOR RESIDUE DDA B 13
10	BC1	SOFTWARE	DXA A:14 , DDL B:10 , DRI B:11	BINDING SITE FOR RESIDUE DDA A 13
11	BC2	SOFTWARE	DC A:5 , DXA A:14 , DC B:5 , DXA B:15	BINDING SITE FOR RESIDUE MG B 14
12	BC3	SOFTWARE	DA A:7 , DDL A:10 , DRI A:11 , DXA A:14 , DG B:4 , DC B:5 , DC B:6 , DA B:7 , DDA B:9 , DDA B:13 , MG B:14	BINDING SITE FOR RESIDUE DXA B 15
13	BC4	SOFTWARE	DG A:4 , DC A:5 , DC A:6 , DA A:7 , DDA A:9 , DDA A:13 , DA B:7 , DRI B:11 , MG B:14 , DXA B:15	BINDING SITE FOR RESIDUE DXA A 14

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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Exons (0, 0)

Sequences/Alignments

NMR Structure

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Chain A from PDB  Type:DNA  Length:8
                                      
                   1cp8 A 1 TTGGCCAA 8

Chain B from PDB  Type:DNA  Length:8
                                      
                   1cp8 B 1 TTGGCCAA 8

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