Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)

(-) Description

Title :  MALARIAL PURINE PHOSPHORIBOSYLTRANSFERASE
 
Authors :  W. Shi, C. M. Li, P. C. Tyler, R. H. Furneaux, S. M. Cahill, M. E. Girvin, C. Grubmeyer, V. L. Schramm, S. C. Almo
Date :  08 Apr 99  (Deposition) - 18 Aug 99  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  C,D  (2x)
Biol. Unit 3:  A,B  (2x)
Keywords :  Malaria, Purine Salvage, Phosphoribosyltransferase, Transition State Inhibitor, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  W. Shi, C. M. Li, P. C. Tyler, R. H. Furneaux, S. M. Cahill, M. E. Girvin, C. Grubmeyer, V. L. Schramm, S. C. Almo
The 2. 0 A Structure Of Malarial Purine Phosphoribosyltransferase In Complex With A Transition-Stat Analogue Inhibitor.
Biochemistry V. 38 9872 1999
PubMed-ID: 10433693  |  Reference-DOI: 10.1021/BI990664P

(-) Compounds

Molecule 1 - PROTEIN (HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE)
    ChainsA, B, C, D
    EC Number2.4.2.8
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Organism CommonMALARIA PARASITE P. FALCIPARUM
    Organism ScientificPLASMODIUM FALCIPARUM
    Organism Taxid5833

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)ABCD
Biological Unit 2 (2x)  CD
Biological Unit 3 (2x)AB  

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 16)

Asymmetric Unit (3, 16)
No.NameCountTypeFull Name
1IRP4Ligand/Ion(1S)-1(9-DEAZAHYPOXANTHIN-9YL)1,4-DIDEOXY-1,4-IMINO-D-RIBITOL-5-PHOSPHATE
2MG8Ligand/IonMAGNESIUM ION
3POP4Ligand/IonPYROPHOSPHATE 2-
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
1IRP4Ligand/Ion(1S)-1(9-DEAZAHYPOXANTHIN-9YL)1,4-DIDEOXY-1,4-IMINO-D-RIBITOL-5-PHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
3POP4Ligand/IonPYROPHOSPHATE 2-
Biological Unit 2 (2, 8)
No.NameCountTypeFull Name
1IRP4Ligand/Ion(1S)-1(9-DEAZAHYPOXANTHIN-9YL)1,4-DIDEOXY-1,4-IMINO-D-RIBITOL-5-PHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
3POP4Ligand/IonPYROPHOSPHATE 2-
Biological Unit 3 (2, 8)
No.NameCountTypeFull Name
1IRP4Ligand/Ion(1S)-1(9-DEAZAHYPOXANTHIN-9YL)1,4-DIDEOXY-1,4-IMINO-D-RIBITOL-5-PHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
3POP4Ligand/IonPYROPHOSPHATE 2-

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREIRP A:300 , POP A:400 , HOH A:516 , HOH A:603BINDING SITE FOR RESIDUE MG A 405
02AC2SOFTWAREASP A:204 , POP A:400 , HOH A:542 , HOH A:616 , HOH A:664BINDING SITE FOR RESIDUE MG A 406
03AC3SOFTWAREIRP B:300 , POP B:400 , HOH B:547 , HOH B:557BINDING SITE FOR RESIDUE MG B 405
04AC4SOFTWAREASP B:204 , POP B:400 , HOH B:507 , HOH B:548 , HOH B:552BINDING SITE FOR RESIDUE MG B 406
05AC5SOFTWAREIRP C:300 , POP C:400 , HOH C:641 , HOH C:651BINDING SITE FOR RESIDUE MG C 405
06AC6SOFTWAREASP C:204 , POP C:400 , HOH C:535 , HOH C:554 , HOH C:585BINDING SITE FOR RESIDUE MG C 406
07AC7SOFTWAREIRP D:300 , POP D:400 , HOH D:562 , HOH D:685BINDING SITE FOR RESIDUE MG D 405
08AC8SOFTWAREASP D:204 , POP D:400 , HOH D:517 , HOH D:596 , HOH D:612BINDING SITE FOR RESIDUE MG D 406
09AC9SOFTWARETYR A:116 , GLU A:144 , ASP A:145 , ILE A:146 , ASP A:148 , THR A:149 , GLY A:150 , LYS A:151 , THR A:152 , LYS A:176 , PHE A:197 , VAL A:198 , ASP A:204 , POP A:400 , MG A:405 , HOH A:503 , HOH A:505 , HOH A:616BINDING SITE FOR RESIDUE IRP A 300
10BC1SOFTWARELYS A:77 , GLY A:78 , ARG A:112 , VAL A:113 , LYS A:114 , SER A:115 , TYR A:116 , ASP A:204 , ARG A:210 , IRP A:300 , MG A:405 , MG A:406 , HOH A:516 , HOH A:543 , HOH A:603 , HOH A:616 , HOH A:664BINDING SITE FOR RESIDUE POP A 400
11BC2SOFTWARETYR B:116 , GLU B:144 , ASP B:145 , ILE B:146 , ASP B:148 , THR B:149 , GLY B:150 , LYS B:151 , THR B:152 , LYS B:176 , PHE B:197 , VAL B:198 , ASP B:204 , POP B:400 , MG B:405 , HOH B:502 , HOH B:515 , HOH B:547 , HOH B:548BINDING SITE FOR RESIDUE IRP B 300
12BC3SOFTWARELEU B:76 , LYS B:77 , GLY B:78 , ARG B:112 , VAL B:113 , LYS B:114 , SER B:115 , TYR B:116 , ASP B:204 , ARG B:210 , IRP B:300 , MG B:405 , MG B:406 , HOH B:507 , HOH B:723BINDING SITE FOR RESIDUE POP B 400
13BC4SOFTWARETYR C:116 , GLU C:144 , ASP C:145 , ILE C:146 , ASP C:148 , THR C:149 , GLY C:150 , LYS C:151 , THR C:152 , LYS C:176 , PHE C:197 , VAL C:198 , LEU C:203 , ASP C:204 , POP C:400 , MG C:405 , HOH C:508 , HOH C:535 , HOH C:599BINDING SITE FOR RESIDUE IRP C 300
14BC5SOFTWARELYS C:77 , GLY C:78 , ARG C:112 , LYS C:114 , SER C:115 , TYR C:116 , ASP C:204 , ARG C:210 , IRP C:300 , MG C:405 , MG C:406 , HOH C:531 , HOH C:534 , HOH C:585 , HOH C:867BINDING SITE FOR RESIDUE POP C 400
15BC6SOFTWARETYR D:116 , GLU D:144 , ASP D:145 , ILE D:146 , ASP D:148 , THR D:149 , GLY D:150 , LYS D:151 , THR D:152 , LYS D:176 , PHE D:197 , VAL D:198 , LEU D:203 , ASP D:204 , POP D:400 , MG D:405 , HOH D:517 , HOH D:569 , HOH D:579BINDING SITE FOR RESIDUE IRP D 300
16BC7SOFTWARELYS D:77 , GLY D:78 , ARG D:112 , VAL D:113 , LYS D:114 , SER D:115 , TYR D:116 , ASP D:204 , ARG D:210 , IRP D:300 , MG D:405 , MG D:406 , HOH D:562 , HOH D:612 , HOH D:638 , HOH D:685 , HOH D:894BINDING SITE FOR RESIDUE POP D 400

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1CJB)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Leu A:76 -Lys A:77
2Leu B:76 -Lys B:77
3Leu C:76 -Lys C:77
4Leu D:76 -Lys D:77

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1CJB)

(-) PROSITE Motifs  (1, 4)

Asymmetric Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PUR_PYR_PR_TRANSFERPS00103 Purine/pyrimidine phosphoribosyl transferases signature.HGXR_PLAFG140-152
 
 
 
  4A:140-152
B:140-152
C:140-152
D:140-152
Biological Unit 1 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PUR_PYR_PR_TRANSFERPS00103 Purine/pyrimidine phosphoribosyl transferases signature.HGXR_PLAFG140-152
 
 
 
  4A:140-152
B:140-152
C:140-152
D:140-152
Biological Unit 2 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PUR_PYR_PR_TRANSFERPS00103 Purine/pyrimidine phosphoribosyl transferases signature.HGXR_PLAFG140-152
 
 
 
  4-
-
C:140-152
D:140-152
Biological Unit 3 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PUR_PYR_PR_TRANSFERPS00103 Purine/pyrimidine phosphoribosyl transferases signature.HGXR_PLAFG140-152
 
 
 
  4A:140-152
B:140-152
-
-

(-) Exons   (0, 0)

(no "Exon" information available for 1CJB)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:228
 aligned with HGXR_PLAFG | P20035 from UniProtKB/Swiss-Prot  Length:231

    Alignment length:228
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221        
           HGXR_PLAFG     2 PIPNNPGAGENAFDPVFVNDDDGYDLDSFMIPAHYKKYLTKVLVPNGVIKNRIEKLAYDIKKVYNNEEFHILCLLKGSRGFFTALLKHLSRIHNYSAVETSKPLFGEHYVRVKSYCNDQSTGTLEIVSEDLSCLKGKHVLIVEDIIDTGKTLVKFCEYLKKFEIKTVAIACLFIKRTPLWNGFKADFVGFSIPDHFVVGYSLDYNEIFRDLDHCCLVNDEGKKKYKAT 229
               SCOP domains d1cjba_ A: Hypoxanthine-guanine PRTase (HGPRTase)                                                                                                                                                                                    SCOP domains
               CATH domains 1cjbA00 A:2-229  [code=3.40.50.2020, no name defined]                                                                                                                                                                                CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .........................hhh.......hhheeee...hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhhhhh........eeeeeeeee...........eeee..hhhh...eeeeee......hhhhhhhhhhhhh...eeeeee.eee..............eee......................eee.hhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------PUR_PYR_PR_TR----------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1cjb A   2 PIPNNPGAGENAFDPVFVNDDDGYDLDSFMIPAHYKKYLTKVLVPNGVIKNRIEKLAYDIKKVYNNEEFHILCLLKGSRGFFTALLKHLSRIHNYSAVETSKPLFGEHYVRVKSYCNDQSTGTLEIVSEDLSCLKGKHVLIVEDIIDTGKTLVKFCEYLKKFEIKTVAIACLFIKRTPLWNGFKADFVGFSIPDHFVVGYSLDYNEIFRDLDHCCLVNDEGKKKYKAT 229
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221        

Chain B from PDB  Type:PROTEIN  Length:228
 aligned with HGXR_PLAFG | P20035 from UniProtKB/Swiss-Prot  Length:231

    Alignment length:228
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221        
           HGXR_PLAFG     2 PIPNNPGAGENAFDPVFVNDDDGYDLDSFMIPAHYKKYLTKVLVPNGVIKNRIEKLAYDIKKVYNNEEFHILCLLKGSRGFFTALLKHLSRIHNYSAVETSKPLFGEHYVRVKSYCNDQSTGTLEIVSEDLSCLKGKHVLIVEDIIDTGKTLVKFCEYLKKFEIKTVAIACLFIKRTPLWNGFKADFVGFSIPDHFVVGYSLDYNEIFRDLDHCCLVNDEGKKKYKAT 229
               SCOP domains d1cjbb_ B: Hypoxanthine-guanine PRTase (HGPRTase)                                                                                                                                                                                    SCOP domains
               CATH domains 1cjbB00 B:2-229  [code=3.40.50.2020, no name defined]                                                                                                                                                                                CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .........................hhh.......hhheeee...hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhhhhh........eeeeeee....................hhh...eeeeee......hhhhhhhhhhhhh...eeeeee.eee..............eee......................eee.hhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------PUR_PYR_PR_TR----------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1cjb B   2 PIPNNPGAGENAFDPVFVNDDDGYDLDSFMIPAHYKKYLTKVLVPNGVIKNRIEKLAYDIKKVYNNEEFHILCLLKGSRGFFTALLKHLSRIHNYSAVETSKPLFGEHYVRVKSYCNDQSTGTLEIVSEDLSCLKGKHVLIVEDIIDTGKTLVKFCEYLKKFEIKTVAIACLFIKRTPLWNGFKADFVGFSIPDHFVVGYSLDYNEIFRDLDHCCLVNDEGKKKYKAT 229
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221        

Chain C from PDB  Type:PROTEIN  Length:230
 aligned with HGXR_PLAFG | P20035 from UniProtKB/Swiss-Prot  Length:231

    Alignment length:230
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231
           HGXR_PLAFG     2 PIPNNPGAGENAFDPVFVNDDDGYDLDSFMIPAHYKKYLTKVLVPNGVIKNRIEKLAYDIKKVYNNEEFHILCLLKGSRGFFTALLKHLSRIHNYSAVETSKPLFGEHYVRVKSYCNDQSTGTLEIVSEDLSCLKGKHVLIVEDIIDTGKTLVKFCEYLKKFEIKTVAIACLFIKRTPLWNGFKADFVGFSIPDHFVVGYSLDYNEIFRDLDHCCLVNDEGKKKYKATSL 231
               SCOP domains d1cjbc_ C: Hypoxanthine-guanine PRTase (HGPRTase)                                                                                                                                                                                      SCOP domains
               CATH domains 1cjbC00 C:2-231  [code=3.40.50.2020, no name defined]                                                                                                                                                                                  CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........................hhh....hhhhhheeee...hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhhhh.........eeeeeee...................hhhh...eeeeee......hhhhhhhhhhhhh...eeeeee.eee..............eee......................eee.hhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------PUR_PYR_PR_TR------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1cjb C   2 PIPNNPGAGENAFDPVFVNDDDGYDLDSFMIPAHYKKYLTKVLVPNGVIKNRIEKLAYDIKKVYNNEEFHILCLLKGSRGFFTALLKHLSRIHNYSAVETSKPLFGEHYVRVKSYCNDQSTGTLEIVSEDLSCLKGKHVLIVEDIIDTGKTLVKFCEYLKKFEIKTVAIACLFIKRTPLWNGFKADFVGFSIPDHFVVGYSLDYNEIFRDLDHCCLVNDEGKKKYKATSL 231
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231

Chain D from PDB  Type:PROTEIN  Length:228
 aligned with HGXR_PLAFG | P20035 from UniProtKB/Swiss-Prot  Length:231

    Alignment length:228
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221        
           HGXR_PLAFG     2 PIPNNPGAGENAFDPVFVNDDDGYDLDSFMIPAHYKKYLTKVLVPNGVIKNRIEKLAYDIKKVYNNEEFHILCLLKGSRGFFTALLKHLSRIHNYSAVETSKPLFGEHYVRVKSYCNDQSTGTLEIVSEDLSCLKGKHVLIVEDIIDTGKTLVKFCEYLKKFEIKTVAIACLFIKRTPLWNGFKADFVGFSIPDHFVVGYSLDYNEIFRDLDHCCLVNDEGKKKYKAT 229
               SCOP domains d1cjbd_ D: Hypoxanthine-guanine PRTase (HGPRTase)                                                                                                                                                                                    SCOP domains
               CATH domains 1cjbD00 D:2-229  [code=3.40.50.2020, no name defined]                                                                                                                                                                                CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ................................hhhhhheeee...hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhhhh.........eeeeeeeee...........eeee..hhhh...eeeeee......hhhhhhhhhhhhh...eeeeee.eee..............eee......................eee.hhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------PUR_PYR_PR_TR----------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1cjb D   2 PIPNNPGAGENAFDPVFVNDDDGYDLDSFMIPAHYKKYLTKVLVPNGVIKNRIEKLAYDIKKVYNNEEFHILCLLKGSRGFFTALLKHLSRIHNYSAVETSKPLFGEHYVRVKSYCNDQSTGTLEIVSEDLSCLKGKHVLIVEDIIDTGKTLVKFCEYLKKFEIKTVAIACLFIKRTPLWNGFKADFVGFSIPDHFVVGYSLDYNEIFRDLDHCCLVNDEGKKKYKAT 229
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221        

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1CJB)

(-) Gene Ontology  (13, 13)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (HGXR_PLAFG | P20035)
molecular function
    GO:0052657    guanine phosphoribosyltransferase activity    Catalysis of the reaction: GMP + diphosphate = guanine + 5-phospho-alpha-D-ribose 1-diphosphate.
    GO:0004422    hypoxanthine phosphoribosyltransferase activity    Catalysis of the reaction: IMP + diphosphate = hypoxanthine + 5-phospho-alpha-D-ribose 1-diphosphate.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016757    transferase activity, transferring glycosyl groups    Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor).
    GO:0000310    xanthine phosphoribosyltransferase activity    Catalysis of the reaction: 5-phospho-alpha-D-ribose 1-diphosphate + xanthine = (9-D-ribosylxanthine)-5'-phosphate + diphosphate.
biological process
    GO:0032263    GMP salvage    Any process which produces guanosine monophosphate from derivatives of it, without de novo synthesis.
    GO:0032264    IMP salvage    Any process which produces inosine monophosphate from derivatives of it, without de novo synthesis.
    GO:0032265    XMP salvage    Any process which produces xanthosine monophosphate from derivatives of it, without de novo synthesis.
    GO:0009116    nucleoside metabolic process    The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine).
    GO:0006166    purine ribonucleoside salvage    Any process which produces a purine nucleoside from derivatives of it, without de novo synthesis.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    IRP  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    POP  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Leu A:76 - Lys A:77   [ RasMol ]  
    Leu B:76 - Lys B:77   [ RasMol ]  
    Leu C:76 - Lys C:77   [ RasMol ]  
    Leu D:76 - Lys D:77   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  1cjb
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  HGXR_PLAFG | P20035
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  2.4.2.8
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  HGXR_PLAFG | P20035
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HGXR_PLAFG | P200352vfa 3ozf 3ozg

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1CJB)