1CJ0 - JenaLib

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:464
 aligned with GLYC_RABIT | P07511 from UniProtKB/Swiss-Prot  Length:484

    Alignment length:470
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484
          GLYC_RABIT     15 WSSHEQMLAQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGPRATLKEFKEKLAGDEKHQRAVRALRQEVESFAALFPLPGLPGF  484
               SCOP domains d1cj0a_ A: Serine hydroxymethyltransferase                                                                                                                                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains ---------------1cj0A01                  1cj0A02 A:37-289 Type I PLP-dependent aspartate aminotransferase-like (Major domain)                                                                                                                                                                                               1cj0A01 A:12-36,A:290-4180 Aspartate Aminotransferase, domain 1                                                                                             CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhh.hhhhhhhhhhhhhhhh............hhhhhhhh.hhhh.................hhhhhhhhhhhhhhh.......eeee.....hhhhhhhhhhhh.....eeeee.......hhh..........hhhhh.eeeee..........hhhhhhhhhhh...eeee..........hhhhhhhhhhh..eeeee....hhhhhh.....hhh...eeeee..........eeeeee.......------....hhhhhhhhh.........hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh............eeeeehhhh...hhhhhhhhhh.....eee............eeeee.hhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SHMT             --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1cj0 A   -8 WSSHEQMLAQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRRGVRSVD------ILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGPRATLKEFKEKLAGDEKHQRAVRALRQEVESFAALFPLPGLPGF 4180
                                 ||  4  ||    16        26        36        46        56        66        76        86  || |||92       102       112|||    122       132 || ||1381||||   147 |||   156       166       176       186       196       206       216       226       236      2442  |    247  |||||254       264       274       284       294       304       314       324       334       344       355       365      3741||  |||385     ||394| |||| 398||  || 404|||||| 411||  |||418|     4180
                                -3|     7|                                                                             89| |||||                 112|||                134| ||  |||141     149||                                                                                           244|   |    247  |||||||                                                                                                352|                 374|||  |||      391|| || ||||397 ||  || 404|||||| 411||  |||| ||    4189|
                                  1     10                                                                             891 |||||                 1121||                1341 ||  |||||      1491|                                                                                           2441   |       250||||||                                                                                                 354                 3741||  |||      3911| || |||| |399|  || 4041||||| 4111|  |||| ||     4180
                                                                                                                         893||||                   113|                  1343|  |||||        150                                                                                               2445       2501|||||                                                                                                                      3742|  |||        392 || |||| |3991  ||  4042||||   412  |||| ||         
                                                                                                                           90|||                    115                    135  |||||                                                                                                                      2502||||                                                                                                                        375  |||          394| |||| |   3994|    405|||      415||| ||         
                                                                                                                            91||                                              138||||                                                                                                                        251|||                                                                                                                           378||          3941 |||| |     400     406||      4151|| ||         
                                                                                                                            911|                                              1381|||                                                                                                                         252||                                                                                                                            380|            3943||| |             4061|       4152| ||         
                                                                                                                              92                                                139||                                                                                                                         2521|                                                                                                                             382              395|| |               407         416 ||         
                                                                                                                                                                                 140|                                                                                                                           253                                                                                                                                               396| |                             418|         
                                                                                                                                                                                 1401                                                                                                                                                                                                                                                                             3961 |                             4181

Chain B from PDB  Type:PROTEIN  Length:466
 aligned with GLYC_RABIT | P07511 from UniProtKB/Swiss-Prot  Length:484

    Alignment length:470
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484
          GLYC_RABIT     15 WSSHEQMLAQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGPRATLKEFKEKLAGDEKHQRAVRALRQEVESFAALFPLPGLPGF  484
               SCOP domains d1cj0b_ B: Serine hydroxymethyltransferase                                                                                                                                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains ---------------1cj0B01                  1cj0B02 B:37-289 Type I PLP-dependent aspartate aminotransferase-like (Major domain)                                                                                                                                                                                               1cj0B01 B:12-36,B:290-4180 Aspartate Aminotransferase, domain 1                                                                                             CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhh.hhhhhhhhhhhhhhhh............hhhhhhhh.hhhh...............hhhhhhhhhhhhhhhhh.......eeee.....hhhhhhhhhhhh.....eeeee.hhh...hhh...........hhhh.eeeee..........hhhhhhhhhhh...eeee..........hhhhhhhhhhh..eeeee....hhhhhh.....hhh...eeeee..........eeeeee.......----......hhhhhhhhh.........hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh............eeeeehhhh...hhhhhhhhhh.....eee............eeeee.hhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SHMT             --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1cj0 B   -8 WSSHEQMLAQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRRGVRSVD----KEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGPRATLKEFKEKLAGDEKHQRAVRALRQEVESFAALFPLPGLPGF 4180
                                 ||  4  ||    16        26        36        46        56        66        76        86  || |||92       102       112|||    122       132 || ||1381||||   147 |||   156       166       176       186       196       206       216       226       236      2442  |    247  |||||254       264       274       284       294       304       314       324       334       344       355       365      3741||  |||385     ||394| |||| 398||  || 404|||||| 411||  |||418|     4180
                                -3|     7|                                                                             89| |||||                 112|||                134| ||  |||141     149||                                                                                           244|   |  245  250||||||                                                                                                352|                 374|||  |||      391|| || ||||397 ||  || 404|||||| 411||  |||| ||    4189|
                                  1     10                                                                             891 |||||                 1121||                1341 ||  |||||      1491|                                                                                           2441   |       2501|||||                                                                                                 354                 3741||  |||      3911| || |||| |399|  || 4041||||| 4111|  |||| ||     4180
                                                                                                                         893||||                   113|                  1343|  |||||        150                                                                                               2445        2502||||                                                                                                                      3742|  |||        392 || |||| |3991  ||  4042||||   412  |||| ||         
                                                                                                                           90|||                    115                    135  |||||                                                                                                                        251|||                                                                                                                        375  |||          394| |||| |   3994|    405|||      415||| ||         
                                                                                                                            91||                                              138||||                                                                                                                         252||                                                                                                                           378||          3941 |||| |     400     406||      4151|| ||         
                                                                                                                            911|                                              1381|||                                                                                                                         2521|                                                                                                                            380|            3943||| |             4061|       4152| ||         
                                                                                                                              92                                                139||                                                                                                                           253                                                                                                                             382              395|| |               407         416 ||         
                                                                                                                                                                                 140|                                                                                                                                                                                                                                                                             396| |                             418|         
                                                                                                                                                                                 1401                                                                                                                                                                                                                                                                             3961 |                             4181

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (GLYC_RABIT | P07511)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0004372	glycine hydroxymethyltransferase activity	Catalysis of the reaction: 5,10-methylenetetrahydrofolate + glycine + H2O = tetrahydrofolate + L-serine.
	GO:0042803	protein homodimerization activity	Interacting selectively and non-covalently with an identical protein to form a homodimer.
	GO:0030170	pyridoxal phosphate binding	Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
	GO:0070905	serine binding	Interacting selectively and non-covalently with 2-amino-3-hydroxypropanoic acid.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0006565	L-serine catabolic process	The chemical reactions and pathways resulting in the breakdown of L-serine, the L-enantiomer of serine, i.e. (2S)-2-amino-3-hydroxypropanoic acid.
	GO:0006563	L-serine metabolic process	The chemical reactions and pathways involving L-serine, the L-enantiomer of serine, i.e. (2S)-2-amino-3-hydroxypropanoic acid.
	GO:1904482	cellular response to tetrahydrofolate	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a tetrahydrofolate stimulus.
	GO:0006231	dTMP biosynthetic process	The chemical reactions and pathways resulting in the formation of dTMP, deoxyribosylthymine monophosphate (2'-deoxyribosylthymine 5'-phosphate).
	GO:0046655	folic acid metabolic process	The chemical reactions and pathways involving folic acid, pteroylglutamic acid. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines.
	GO:0006544	glycine metabolic process	The chemical reactions and pathways involving glycine, aminoethanoic acid.
	GO:0006730	one-carbon metabolic process	The chemical reactions and pathways involving the transfer of one-carbon units in various oxidation states.
	GO:0051289	protein homotetramerization	The formation of a protein homotetramer, a macromolecular structure consisting of four noncovalently associated identical subunits.
	GO:0051262	protein tetramerization	The formation of a protein tetramer, a macromolecular structure consisting of four noncovalently associated identical or nonidentical subunits.
	GO:0009113	purine nucleobase biosynthetic process	The chemical reactions and pathways resulting in the formation of purine nucleobases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, which include adenine and guanine.
	GO:0035999	tetrahydrofolate interconversion	The chemical reactions and pathways by which one-carbon (C1) units are transferred between tetrahydrofolate molecules, to synthesise other tetrahydrofolate molecules.
	GO:0046653	tetrahydrofolate metabolic process	The chemical reactions and pathways involving tetrahydrofolate, 5,6,7,8-tetrahydrofolic acid, a folate derivative bearing additional hydrogens on the pterin group.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 2)

Sites (4, 4)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 2)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (2, 4)

Pfam Domains (0, 0)

Gene Ontology (23, 23)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File