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(-) Description

Title :  HYDRATION STRUCTURE OF A COLLAGEN PEPTIDE
 
Authors :  J. Bella, B. Brodsky, H. M. Berman
Date :  09 Jun 95  (Deposition) - 20 Jun 96  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Collagen, Collagen Hydration, Hydroxyproline, Connective Tissue, Extracellular Matrix (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Bella, B. Brodsky, H. M. Berman
Hydration Structure Of A Collagen Peptide.
Structure V. 3 893 1995
PubMed-ID: 8535783  |  Reference-DOI: 10.1016/S0969-2126(01)00224-6
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - COLLAGEN-LIKE PEPTIDE
    Chains: A, B, C
    Engineered: YES
    Other Details: HYDRATION ANALYSIS
    Synonym: (PRO-HYP-GLY)4 PRO-HYP-ALA (PRO-HYP-GLY)5

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 37)

Asymmetric/Biological Unit (2, 37)
No.NameCountTypeFull Name
1ACY7Ligand/IonACETIC ACID
2HYP30Mod. Amino Acid4-HYDROXYPROLINE

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO B:37 , HOH B:229 , HYP C:65 , GLY C:66 , HOH C:110BINDING SITE FOR RESIDUE ACY C 301
2AC2SOFTWAREHYP A:2 , PRO B:34 , HYP B:35 , PRO C:88 , HOH C:101BINDING SITE FOR RESIDUE ACY B 302
3AC3SOFTWAREHYP A:5 , PRO A:25 , HOH A:185 , PRO B:37 , HYP C:65 , HOH C:105BINDING SITE FOR RESIDUE ACY A 303
4AC4SOFTWAREPRO A:13 , HYP A:17 , HOH A:117 , HOH A:190 , ACY A:307 , PRO B:49 , HYP B:50 , HOH C:120 , ACY C:305BINDING SITE FOR RESIDUE ACY A 304
5AC5SOFTWAREACY A:304 , HYP B:50 , GLY B:51 , PRO B:52 , HYP C:71 , HOH C:120 , HOH C:195BINDING SITE FOR RESIDUE ACY C 305
6AC6SOFTWAREPRO A:4 , HYP A:5 , HOH A:191 , HYP C:62 , HOH C:218BINDING SITE FOR RESIDUE ACY A 306
7AC7SOFTWAREGLY A:12 , PRO A:13 , HYP A:14 , PRO A:16 , HYP A:17 , HOH A:121 , HOH A:188 , HOH A:190 , HOH A:221 , ACY A:304BINDING SITE FOR RESIDUE ACY A 307

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1CGD)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Pro B:31 -Hyp B:32
2Pro C:61 -Hyp C:62

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1CGD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1CGD)

(-) Exons   (0, 0)

(no "Exon" information available for 1CGD)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:30
                                                             
               SCOP domains ------------------------------ SCOP domains
               CATH domains ------------------------------ CATH domains
               Pfam domains ------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------ PROSITE
                 Transcript ------------------------------ Transcript
                  1cgd A  1 PpGPpGPpGPpGPpAPpGPpGPpGPpGPpG 30
                             |  |  |10|  |  | 20  |  |  30
                             |  |  |  |  |  |  |  |  |  | 
                             2-HYP |  |  |  |  |  |  |  | 
                                5-HYP |  |  |  |  |  |  | 
                                   8-HYP |  |  |  |  |  | 
                                     11-HYP |  |  |  |  | 
                                        14-HYP |  |  |  | 
                                           17-HYP |  |  | 
                                              20-HYP |  | 
                                                 23-HYP | 


Chain B from PDB  Type:PROTEIN  Length:30
                                                             
               SCOP domains ------------------------------ SCOP domains
               CATH domains ------------------------------ CATH domains
               Pfam domains ------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------ PROSITE
                 Transcript ------------------------------ Transcript
                  1cgd B 31 PpGPpGPpGPpGPpAPpGPpGPpGPpGPpG 60
                             |  |  |40|  |  | 50  |  |  60
                             |  |  |  |  |  |  |  |  |  | 
                            32-HYP |  |  |  |  |  |  |  | 
                               35-HYP |  |  |  |  |  |  | 
                                  38-HYP |  |  |  |  |  | 
                                     41-HYP |  |  |  |  | 
                                        44-HYP |  |  |  | 
                                           47-HYP |  |  | 
                                              50-HYP |  | 
                                                 53-HYP | 


Chain C from PDB  Type:PROTEIN  Length:30
                                                             
               SCOP domains ------------------------------ SCOP domains
               CATH domains ------------------------------ CATH domains
               Pfam domains ------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------ PROSITE
                 Transcript ------------------------------ Transcript
                  1cgd C 61 PpGPpGPpGPpGPpAPpGPpGPpGPpGPpG 90
                             |  |  |70|  |  | 80  |  |  90
                             |  |  |  |  |  |  |  |  |  | 
                            62-HYP |  |  |  |  |  |  |  | 
                               65-HYP |  |  |  |  |  |  | 
                                  68-HYP |  |  |  |  |  | 
                                     71-HYP |  |  |  |  | 
                                        74-HYP |  |  |  | 
                                           77-HYP |  |  | 
                                              80-HYP |  | 
                                                 83-HYP |
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1CGD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1CGD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1CGD)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1CGD)

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