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(-) Description

Title :  CRYSTAL STRUCTURE OF TANDEM TYPE III FIBRONECTIN DOMAINS FROM DROSOPHILA NEUROGLIAN AT 2.0 ANGSTROMS
 
Authors :  A. H. Huber, Y. E. Wang, A. J. Bieber, P. J. Bjorkman
Date :  27 Aug 94  (Deposition) - 30 Nov 94  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (4x)
Keywords :  Neural Adhesion Molecule (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. H. Huber, Y. M. Wang, A. J. Bieber, P. J. Bjorkman
Crystal Structure Of Tandem Type Iii Fibronectin Domains From Drosophila Neuroglian At 2. 0 A.
Neuron V. 12 717 1994
PubMed-ID: 7512815  |  Reference-DOI: 10.1016/0896-6273(94)90326-3
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DROSOPHILA NEUROGLIAN
    Cell LineS2
    ChainsA
    EngineeredYES
    GenePOTENTIAL
    Organism CommonFRUIT FLY
    Organism ScientificDROSOPHILA MELANOGASTER
    Organism Taxid7227

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (1x)A
Biological Unit 2 (4x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric Unit (3, 5)
No.NameCountTypeFull Name
1NA1Ligand/IonSODIUM ION
2NAG3Ligand/IonN-ACETYL-D-GLUCOSAMINE
3SO41Ligand/IonSULFATE ION
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1NA-1Ligand/IonSODIUM ION
2NAG3Ligand/IonN-ACETYL-D-GLUCOSAMINE
3SO41Ligand/IonSULFATE ION
Biological Unit 2 (2, 16)
No.NameCountTypeFull Name
1NA-1Ligand/IonSODIUM ION
2NAG12Ligand/IonN-ACETYL-D-GLUCOSAMINE
3SO44Ligand/IonSULFATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARENAG A:2 , HOH A:123 , HOH A:214 , HOH A:216 , ASN A:652 , THR A:653 , SER A:654 , PRO A:657 , TRP A:660 , THR A:685 , HIS A:702BINDING SITE FOR RESIDUE NAG A 1
2AC2SOFTWARENAG A:1 , HIS A:702BINDING SITE FOR RESIDUE NAG A 2
3AC3SOFTWAREHOH A:108 , HOH A:238 , HOH A:240 , SER A:654 , TRP A:681 , ASN A:683BINDING SITE FOR RESIDUE NAG A 3
4AC4SOFTWAREHOH A:92 , HOH A:164 , HIS A:646 , LYS A:666 , ASN A:728 , PRO A:781 , THR A:782BINDING SITE FOR RESIDUE SO4 A 4
5AC5SOFTWAREHOH A:7 , SER A:679 , PRO A:680 , ILE A:740 , ASN A:743BINDING SITE FOR RESIDUE NA A 5
6MBSUNKNOWNSER A:679 , PRO A:680 , ILE A:740 , ASN A:743 , HOH A:7NULL

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1A:625 -A:706

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1CFB)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1CFB)

(-) PROSITE Motifs  (1, 2)

Asymmetric Unit (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FN3PS50853 Fibronectin type-III domain profile.NRG_DROME614-711
716-813
818-915
916-1017
1021-1119
  2A:614-711
A:716-813
-
-
-
Biological Unit 1 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FN3PS50853 Fibronectin type-III domain profile.NRG_DROME614-711
716-813
818-915
916-1017
1021-1119
  2A:614-711
A:716-813
-
-
-
Biological Unit 2 (1, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FN3PS50853 Fibronectin type-III domain profile.NRG_DROME614-711
716-813
818-915
916-1017
1021-1119
  8A:614-711
A:716-813
-
-
-

(-) Exons   (0, 0)

(no "Exon" information available for 1CFB)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:205
 aligned with NRG_DROME | P20241 from UniProtKB/Swiss-Prot  Length:1302

    Alignment length:205
                                   619       629       639       649       659       669       679       689       699       709       719       729       739       749       759       769       779       789       799       809     
            NRG_DROME   610 IVQDVPNAPKLTGITCQADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVAINDRGESNVAAEEVVGYSGEDR 814
               SCOP domains d1cfba1 A:610-709 Neuroglian, two amino proximal Fn3 repeats                                        d1cfba2 A:710-814 Neuroglian, two amino proximal Fn3 repeats                                              SCOP domains
               CATH domains 1cfbA01 A:610-708 Immunoglobulins                                                                  1cfbA02 A:709-814 Immunoglobulins                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeeeee..eeeeeee.........eeeeeeeee......eeeeeeee.....eeeeee...eeeeeeeeeee....hhhhhhhhheee.........eeeeee.....eeeeeee...hhhh..eeeeeeeeeee.......eeeee......eeeee.....eeeeeeeeeee......hhhheeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----FN3  PDB: A:614-711 UniProt: 614-711                                                              ----FN3  PDB: A:716-813 UniProt: 716-813                                                              - PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1cfb A 610 IVQDVPNAPKLTGITCQADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVAINDRGESNVAAEEVVGYSGEDR 814
                                   619       629       639       649       659       669       679       689       699       709       719       729       739       749       759       769       779       789       799       809     

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1CFB)

(-) Gene Ontology  (35, 35)

Asymmetric Unit(hide GO term definitions)
Chain A   (NRG_DROME | P20241)
molecular function
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
biological process
    GO:0008366    axon ensheathment    Any process in which the axon of a neuron is insulated, and that insulation maintained, thereby preventing dispersion of the electrical signal.
    GO:0048675    axon extension    Long distance growth of a single axon process involved in cellular development.
    GO:0007409    axonogenesis    De novo generation of a long process of a neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells. Refers to the morphogenesis or creation of shape or form of the developing axon.
    GO:0007155    cell adhesion    The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
    GO:0061343    cell adhesion involved in heart morphogenesis    The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules that contributes to the shaping of the heart.
    GO:0048036    central complex development    The process whose specific outcome is the progression of the central complex over time, from its formation to the mature structure. The central complex region of the insect brain is thought to be crucial for control of locomotive behavior. Located in the middle of the two protocerebral hemispheres, it comprises four neuropilar regions, the fan-shaped body, the ellipsoid body, the protocerebral bridge and the paired noduli.
    GO:0048813    dendrite morphogenesis    The process in which the anatomical structures of a dendrite are generated and organized. A dendrite is a freely branching protoplasmic process of a nerve cell.
    GO:0007173    epidermal growth factor receptor signaling pathway    A series of molecular signals initiated by binding of a ligand to the tyrosine kinase receptor EGFR (ERBB1) on the surface of a cell. The pathway ends with regulation of a downstream cellular process, e.g. transcription.
    GO:0060857    establishment of glial blood-brain barrier    Establishment of the glial barrier between the blood and the brain. The glial cells in the brain are packed tightly together preventing the passage of most molecules from the blood into the brain. Only lipid soluble molecules or those that are actively transported can pass through the blood-brain barrier.
    GO:0008050    female courtship behavior    The behavior of a female, for the purpose of attracting a sexual partner.
    GO:0007560    imaginal disc morphogenesis    The process in which the anatomical structures derived from an imaginal disc are generated and organized. The imaginal discs are epithelial infoldings in the larvae of holometabolous insects that develop into adult appendages (legs, antennae, wings, etc.) during metamorphosis from larval to adult form.
    GO:0008049    male courtship behavior    The behavior of a male, for the purpose of attracting a sexual partner. An example of this process is found in Drosophila melanogaster.
    GO:0035011    melanotic encapsulation of foreign target    Formation of a multilayered, melanized sheath of cells around a foreign invader.
    GO:0008045    motor neuron axon guidance    The process in which the migration of an axon growth cone of a motor neuron is directed to a specific target site in response to a combination of attractive and repulsive cues.
    GO:0007275    multicellular organism development    The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
    GO:0016319    mushroom body development    The process whose specific outcome is the progression of the mushroom body over time, from its formation to the mature structure. The mushroom body is composed of the prominent neuropil structures of the insect central brain, thought to be crucial for olfactory associated learning. These consist mainly of a bulbous calyx and tightly packaged arrays of thin parallel fibers of the Kenyon cells.
    GO:0021682    nerve maturation    A developmental process, independent of morphogenetic (shape) change, that is required for a nerve to attain its fully functional state.
    GO:0007158    neuron cell-cell adhesion    The attachment of a neuron to another cell via adhesion molecules.
    GO:0048812    neuron projection morphogenesis    The process in which the anatomical structures of a neuron projection are generated and organized. A neuron projection is any process extending from a neural cell, such as axons or dendrites.
    GO:0072499    photoreceptor cell axon guidance    The chemotaxis process that directs the migration of a photoreceptor cell axon growth cone to its target in the optic lobe in response to a combination of attractive and repulsive cues.
    GO:0045924    regulation of female receptivity    Any process that modulates the frequency, rate or extent of the willingness or readiness of a female to receive male advances.
    GO:0035151    regulation of tube size, open tracheal system    Ensuring that an epithelial tube in an open tracheal system is of the correct length and diameter. Tracheal tubes undergo highly regulated tube-size increases during development, expanding up to 40 times their initial size by the end of larval life. Tube size appears to be controlled by regulation of apical membrane expansion and secretion, rather than by changes in cell number, size or shape.
    GO:0019991    septate junction assembly    The assembly of a septate junction, an intercellular junction found in invertebrate epithelia that is characterized by a ladder like appearance in electron micrographs and thought to provide structural strength and to provide a barrier to diffusion of solutes through the intercellular space.
    GO:0050808    synapse organization    A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a synapse, the junction between a neuron and a target (neuron, muscle, or secretory cell).
cellular component
    GO:0005923    bicellular tight junction    An occluding cell-cell junction that is composed of a branching network of sealing strands that completely encircles the apical end of each cell in an epithelial sheet; the outer leaflets of the two interacting plasma membranes are seen to be tightly apposed where sealing strands are present. Each sealing strand is composed of a long row of transmembrane adhesion proteins embedded in each of the two interacting plasma membranes.
    GO:0030054    cell junction    A cellular component that forms a specialized region of connection between two or more cells or between a cell and the extracellular matrix. At a cell junction, anchoring proteins extend through the plasma membrane to link cytoskeletal proteins in one cell to cytoskeletal proteins in neighboring cells or to proteins in the extracellular matrix.
    GO:0035230    cytoneme    A long, thin, polarized cell projection that contains actin and can extend for distances many times the diameter of the cell. Cytonemes represent extensions of cell cytoplasm and typically have a diameter of approximately 0.2um.
    GO:0030175    filopodium    Thin, stiff, actin-based protrusion extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or an axonal or dendritic growth cone, or a dendritic shaft.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016328    lateral plasma membrane    The portion of the plasma membrane at the lateral side of the cell. In epithelial cells, lateral plasma membranes are on the sides of cells which lie at the interface of adjacent cells.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0005919    pleated septate junction    A septate junction in which regular arrays of electron-dense septae span the intermembrane space.
    GO:0005918    septate junction    A cell-cell junction that forms a continuous band around each cell in an epithelium; within the septate junction the membranes of adjacent cells maintain a constant distance of approximately 15 nm; found in invertebrates.

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