Chain A from PDB Type:PROTEIN Length:189
aligned with Q9IPS9_9TOMB | Q9IPS9 from UniProtKB/TrEMBL Length:269
Alignment length:189
89 99 109 119 129 139 149 159 169 179 189 199 209 219 229 239 249 259
Q9IPS9_9TOMB 80 NSTVVSNSELILNLTPIALAYTVQSLPLIATQPAWLGTIADNYSKWRWVSLRIIYSPKCPTTTSGTVAMCLSYDRNDVAPGSRVQLSQTYKAINFPPYAGYDGAAILNTDVTPTSAIYVDVDVTRFDKAWYSTIGTAAFAALTAFDQNQFCPCTVHIGSDGGPAVAVPPGDIFFKYVIELIEPINPTMN 268
SCOP domains d1c8na_ A: Necrovirus coat protein SCOP domains
CATH domains 1c8nA00 A:87-275 [code=2.60.120.20, no name defined] CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..eeeeeeeeeee........eeeeee.....hhhhhhhhh.eeeeeeeeeeeeeee........eeeeeee.........hhhhhhhh...eee....hhhhhhhhh.........eee.hhhhh....ee..hhhhhhh.hhhhhhh....eeeeeee.........eeeeeeeeeeeeee...... Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1c8n A 87 NSTVVSNSELILNLTPIALAYTVQSLPLIATQPAWLGTIADNYSKWRWVSLRIIYSPKCPTTTSGTVAMCLSYDRNDVAPGSRVQLSQTYKAINFPPYAGYDGAAILNTDVTPTSAIYVDVDVTRFDKAWYSTIGTAAFAALTAFDQNQFCPCTVHIGSDGGPAVAVPPGDIFFKYVIELIEPINPTMN 275
96 106 116 126 136 146 156 166 176 186 196 206 216 226 236 246 256 266
Chain B from PDB Type:PROTEIN Length:189
aligned with Q9IPS9_9TOMB | Q9IPS9 from UniProtKB/TrEMBL Length:269
Alignment length:189
90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260
Q9IPS9_9TOMB 81 STVVSNSELILNLTPIALAYTVQSLPLIATQPAWLGTIADNYSKWRWVSLRIIYSPKCPTTTSGTVAMCLSYDRNDVAPGSRVQLSQTYKAINFPPYAGYDGAAILNTDVTPTSAIYVDVDVTRFDKAWYSTIGTAAFAALTAFDQNQFCPCTVHIGSDGGPAVAVPPGDIFFKYVIELIEPINPTMNV 269
SCOP domains d1c8nb_ B: Necrovirus coat protein SCOP domains
CATH domains 1c8nB00 B:88-276 [code=2.60.120.20, no name defined] CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eeeeeeeeeee........eeeeee.....hhhhhhhhh.eeeeeeeeeeeeeee........eeeeeee.........hhhhhhh....eee.......hhhhhh.........eee.hhhhh....ee..hhhhhhh.hhhhhhhhh..eeeeeee.........eeeeeeeeeeeeee.hhhhhh Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1c8n B 88 STVVSNSELILNLTPIALAYTVQSLPLIATQPAWLGTIADNYSKWRWVSLRIIYSPKCPTTTSGTVAMCLSYDRNDVAPGSRVQLSQTYKAINFPPYAGYDGAAILNTDVTPTSAIYVDVDVTRFDKAWYSTIGTAAFAALTAFDQNQFCPCTVHIGSDGGPAVAVPPGDIFFKYVIELIEPINPTMNV 276
97 107 117 127 137 147 157 167 177 187 197 207 217 227 237 247 257 267
Chain C from PDB Type:PROTEIN Length:219
aligned with Q9IPS9_9TOMB | Q9IPS9 from UniProtKB/TrEMBL Length:269
Alignment length:219
59 69 79 89 99 109 119 129 139 149 159 169 179 189 199 209 219 229 239 249 259
Q9IPS9_9TOMB 50 GVSRAGGFVTAPVIGAMVTRPTVPRFGMRGNSTVVSNSELILNLTPIALAYTVQSLPLIATQPAWLGTIADNYSKWRWVSLRIIYSPKCPTTTSGTVAMCLSYDRNDVAPGSRVQLSQTYKAINFPPYAGYDGAAILNTDVTPTSAIYVDVDVTRFDKAWYSTIGTAAFAALTAFDQNQFCPCTVHIGSDGGPAVAVPPGDIFFKYVIELIEPINPTMN 268
SCOP domains d1c8nc_ C: Necrovirus coat protein SCOP domains
CATH domains 1c8nC00 C:57-275 [code=2.60.120.20, no name defined] CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author hhhhhh..................eeeee..eeeeeeeeeeee........eeeeee.....hhhhhhhhh.eeeeeeeeeeeeeee........eeeeeee.........hhhhhhhh...eee....hhhhhhhhhh........eee.hhhhh....ee..hhhhhhh.hhhhhh.....eeeeeee.........eeeeeeeeeeeeee...... Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1c8n C 57 GVSRAGGFVTAPVIGAMVTRPTVPRFGMRGNSTVVSNSELILNLTPIALAYTVQSLPLIATQPAWLGTIADNYSKWRWVSLRIIYSPKCPTTTSGTVAMCLSYDRNDVAPGSRVQLSQTYKAINFPPYAGYDGAAILNTDVTPTSAIYVDVDVTRFDKAWYSTIGTAAFAALTAFDQNQFCPCTVHIGSDGGPAVAVPPGDIFFKYVIELIEPINPTMN 275
66 76 86 96 106 116 126 136 146 156 166 176 186 196 206 216 226 236 246 256 266
Legend: |
|
→ Mismatch |
(orange background) |
|
- |
→ Gap |
(green background, '-', border residues have a numbering label) |
|
|
→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
|
x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
|
extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |