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(-) Description

Title :  CRYSTAL STRUCTURE OF THE ZINC PROTEASE
 
Authors :  G. Kurisu, S. Harada, Y. Kai
Date :  19 Feb 00  (Deposition) - 25 Apr 01  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Alpha And Beta Protein, Metalloproteinase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Kurisu, Y. Kai, S. Harada
Structure Of The Zinc-Binding Site In The Crystal Structure Of A Zinc Endoprotease From Streptomyces Caespitosus At 1 A Resolution.
J. Inorg. Biochem. V. 82 225 2000
PubMed-ID: 11132632  |  Reference-DOI: 10.1016/S0162-0134(00)00136-7
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ZINC ENDOPROTEASE
    Chains: A
    EC Number: 3.4.24.-
    Organism Scientific: STREPTOMYCES CAESPITOSUS
    Organism Taxid: 53502
    Synonym: NCNP

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION
2ZN1Ligand/IonZINC ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:83 , HIS A:87 , ASP A:93 , HOH A:202BINDING SITE FOR RESIDUE ZN A 133
2AC2SOFTWAREASP A:76 , THR A:78 , HOH A:204 , HOH A:205 , HOH A:215 , HOH A:219 , HOH A:222BINDING SITE FOR RESIDUE CA A 134
3ZINAUTHORHIS A:83 , HIS A:87 , ASP A:93 , HOH A:202ZINC COORDINATION

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:99 -A:112

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1C7K)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1C7K)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1C7K)

(-) Exons   (0, 0)

(no "Exon" information available for 1C7K)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:132
 aligned with SNPA_STRCS | P56406 from UniProtKB/Swiss-Prot  Length:132

    Alignment length:132
                                    10        20        30        40        50        60        70        80        90       100       110       120       130  
           SNPA_STRCS     1 TVTVTYDPSNAPSFQQEIANAAQIWNSSVRNVQLRAGGNADFSYYEGNDSRGSYAQTDGHGRGYIFLDYQQNQQYDSTRVTAHETGHVLGLPDHYQGPCSELMSGGGPGPSCTNPYPNAQERSRVNALWANG 132
               SCOP domains d1c7ka_ A: Zinc protease                                                                                                             SCOP domains
               CATH domains 1c7kA00 A:1-132 Collagenase (Catalytic Domain)                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeehhhhhhhhhhhhhhhhhhh..eeeee.....eeeeee......eeee.....eeeeeehhhhhhhhhhhhhhhhhhhhhh..........hhhhh............hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1c7k A   1 TVTVTYDPSNAPSFQQEIANAAQIWNSSVRNVQLRAGGNADFSYYEGNDSRGSYAQTDGHGRGYIFLDYQQNQQYDSTRVTAHETGHVLGLPDHYQGPCSELMSGGGPGPSCTNPYPNAQERSRVNALWANG 132
                                    10        20        30        40        50        60        70        80        90       100       110       120       130
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1C7K)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (SNPA_STRCS | P56406)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004222    metalloendopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
    GO:0008237    metallopeptidase activity    Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SNPA_STRCS | P56406: 1kuh 4hx3

(-) Related Entries Specified in the PDB File

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