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(-) Description

Title :  FAB FRAGMENT FROM MURINE ASCITES
 
Authors :  M. J. Kaminski, C. R. Mackenzie, M. J. Mooibroek, T. E. S. Dahms, T. Hirama, A. N. Houghton, P. B. Chapman, S. V. Evans
Date :  06 Nov 98  (Deposition) - 10 Nov 99  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Antibody (Fab Fragment), Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. J. Kaminski, C. R. Mackenzie, M. J. Mooibroek, T. E. Dahms, T. Hirama, A. N. Houghton, P. B. Chapman, S. V. Evans
The Role Of Homophilic Binding In Anti-Tumor Antibody R24 Recognition Of Molecular Surfaces. Demonstration Of An Intermolecular Beta-Sheet Interaction Between Vh Domains.
J. Biol. Chem. V. 274 5597 1999
PubMed-ID: 10026176  |  Reference-DOI: 10.1074/JBC.274.9.5597
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTEIN (ANTIBODY R24 (LIGHT CHAIN))
    Chains: A
    Fragment: FAB
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
 
Molecule 2 - PROTEIN (ANTIBODY R24 (HEAVY CHAIN))
    Chains: B
    Fragment: FAB
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1BZ7)

(-) Sites  (0, 0)

(no "Site" information available for 1BZ7)

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1A:23 -A:88
2A:134 -A:194
3B:22 -B:96
4B:149 -B:204

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Leu A:94 -Pro A:95
2Tyr A:140 -Pro A:141
3Phe B:155 -Pro B:156
4Glu B:157 -Pro B:158

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1BZ7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1BZ7)

(-) Exons   (0, 0)

(no "Exon" information available for 1BZ7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:206
                                                                                                                                                                                                                                              
               SCOP domains d1bz7a1 A:1-107 Immunoglobulin light chain kappa variable domain, VL-kappa                                 d1bz7a2 A:108-206 Immunoglobulin light chain kappa constant domain, CL-kappa                        SCOP domains
               CATH domains 1bz7A01 A:1-107 Immunoglobulins                                                                            1bz7A02 A:108-206 Immunoglobulins                                                                   CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeee.....eeeeee........eeeeeee....eeeee.............eeeeee..eeeeee....hhh.eeeeeee............eeee.......eeeee...hhhhh..eeeeeeeee......eeeeeee.........eeee...........eeeeeeeehhhhh....eeeeeee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1bz7 A   1 DIQMTQITSSLSVSLGDRVIISCRASQDIGNFLNWYQQKPDGSLKLLIYYTSRLQSGVPSRFSGWGSGTDYSLTISNLEEEDIATFFCQQGKTLPYTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVT 206
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200      


Chain B from PDB  Type:PROTEIN  Length:217
                                                                                                                                                                                                                                                         
               SCOP domains d1bz7b1 B:1-122 Immunoglobulin heavy chain variable domain, VH                                                            d1bz7b2 B:123-217 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                 SCOP domains
               CATH domains 1bz7B01 B:1-122 Immunoglobulins                                                                                           1bz7B02 B:123-217 Immunoglobulins                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eee.....eeeeeeee...hhh..eeeeee.....eeeeeee......eee.hhh...eeeeeehhh.eeeeee....hhh.eeeeeee.................eeeee........eeeee..........eeeeeeeeeee................eeee.........eeeeeeeeeehhh.......eeee.....eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1bz7 B   1 DVQLVESGGGLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRSEDTAIYYCTRGGTGTRSLYYFDYWGQGATLIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDK 217
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (4, 4)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1BZ7)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1BZ7)

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  Cis Peptide Bonds
    Glu B:157 - Pro B:158   [ RasMol ]  
    Leu A:94 - Pro A:95   [ RasMol ]  
    Phe B:155 - Pro B:156   [ RasMol ]  
    Tyr A:140 - Pro A:141   [ RasMol ]  
 

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 Related Entries

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