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(-) Description

Title :  THREE-DIMENSIONAL STRUCTURE OF BOMBYXIN-II, AN INSULIN-RELATED BRAIN-SECRETORY PEPTIDE OF THE SILKMOTH BOMBYX MORI: COMPARISON WITH INSULIN AND RELAXIN
 
Authors :  K. Nagata, H. Hatanaka, D. Kohda, F. Inagaki
Date :  21 Jul 94  (Deposition) - 01 Nov 94  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B
Keywords :  Insulin-Like Brain-Secretory Peptide (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  K. Nagata, H. Hatanaka, D. Kohda, H. Kataoka, H. Nagasawa, A. Isogai, H. Ishizaki, A. Suzuki, F. Inagaki
Three-Dimensional Solution Structure Of Bombyxin-Ii An Insulin-Like Peptide Of The Silkmoth Bombyx Mori: Structural Comparison With Insulin And Relaxin.
J. Mol. Biol. V. 253 749 1995
PubMed-ID: 7473749  |  Reference-DOI: 10.1006/JMBI.1995.0588
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - BOMBYXIN-II,BOMBYXIN A-2
    ChainsA
    EngineeredYES
    Organism CommonDOMESTIC SILKWORM
    Organism ScientificBOMBYX MORI
    Organism Taxid7091
 
Molecule 2 - BOMBYXIN-II,BOMBYXIN A-6
    ChainsB
    EngineeredYES
    Organism CommonDOMESTIC SILKWORM
    Organism ScientificBOMBYX MORI
    Organism Taxid7091

 Structural Features

(-) Chains, Units

  
NMR Structure 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1PCA1Mod. Amino AcidPYROGLUTAMIC ACID

(-) Sites  (0, 0)

(no "Site" information available for 1BOM)

(-) SS Bonds  (3, 3)

NMR Structure
No.Residues
1A:6 -A:11
2A:7 -B:7
3A:20 -B:19

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1BOM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1BOM)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1INSULINPS00262 Insulin family signature.BXA2_BOMMO75-89  1A:6-20

(-) Exons   (0, 0)

(no "Exon" information available for 1BOM)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:20
 aligned with BXA2_BOMMO | P15411 from UniProtKB/Swiss-Prot  Length:89

    Alignment length:20
                                    79        89
            BXA2_BOMMO   70 GIVDECCLRPCSVDVLLSYC 89
               SCOP domains d1bom.1 B:,A:        SCOP domains
               CATH domains -------------------- CATH domains
               Pfam domains -------------------- Pfam domains
         Sec.struct. author .hhhhhhh....hhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------- SAPs(SNPs)
                    PROSITE -----INSULIN         PROSITE
                 Transcript -------------------- Transcript
                  1bom A  1 GIVDECCLRPCSVDVLLSYC 20
                                    10        20

Chain B from PDB  Type:PROTEIN  Length:28
 aligned with BXA6_BOMMO | P26729 from UniProtKB/Swiss-Prot  Length:92

    Alignment length:28
                                    29        39        
            BXA6_BOMMO   20 QQPQAVHTYCGRHLARTLADLCWEAGVD 47
               SCOP domains d1bom.1 B:,A: Bombyxin-II    SCOP domains
               CATH domains ---------------------------- CATH domains
               Pfam domains ---------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------- SAPs(SNPs)
                    PROSITE ---------------------------- PROSITE
                 Transcript ---------------------------- Transcript
                  1bom B -2 xQPQAVHTYCGRHLARTLADLCWEAGVD 25
                            |        7        17        
                           -2-PCA                       

   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1BOM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1BOM)

(-) Gene Ontology  (4, 8)

NMR Structure(hide GO term definitions)
Chain A   (BXA2_BOMMO | P15411)
molecular function
    GO:0008083    growth factor activity    The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation.
    GO:0005179    hormone activity    The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects; all bind receptors and trigger some biological process.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.

Chain B   (BXA6_BOMMO | P26729)
molecular function
    GO:0008083    growth factor activity    The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation.
    GO:0005179    hormone activity    The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects; all bind receptors and trigger some biological process.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        BXA2_BOMMO | P154111bon
        BXA6_BOMMO | P267291bon

(-) Related Entries Specified in the PDB File

1bon