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(-) Description

Title :  N-TERMINALLY TRUNCATED RHODANESE
 
Authors :  F. Gliubich, R. Berni, M. Cianci, R. J. Trevino, P. M. Horowitz, G. Zanotti
Date :  04 Aug 98  (Deposition) - 27 Apr 99  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase, Rhodanese, Sulfurtransferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  R. J. Trevino, F. Gliubich, R. Berni, M. Cianci, J. M. Chirgwin, G. Zanotti, P. M. Horowitz
Nh2-Terminal Sequence Truncation Decreases The Stability Of Bovine Rhodanese, Minimally Perturbs Its Crystal Structure, And Enhances Interaction With Groel Under Native Conditions.
J. Biol. Chem. V. 274 13938 1999
PubMed-ID: 10318804  |  Reference-DOI: 10.1074/JBC.274.20.13938
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - RHODANESE
    Cellular LocationCYTOPLASM
    Cell Line293
    ChainsA
    EC Number2.8.1.1
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21
    Expression System Cellular LocationCYTOPLASM
    Expression System PlasmidPTTQ19
    Expression System StrainBL21
    Expression System Taxid511693
    Expression System VectorPLASMID
    FragmentDEL(1-7)
    OrganLIVER
    Organism CommonCATTLE
    Organism ScientificBOS TAURUS
    Organism Taxid9913

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1CSS1Mod. Amino AcidS-MERCAPTOCYSTEINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1CT1UNKNOWNGLU A:71 , VAL A:72 , MET A:73 , LYS A:249 , ASP A:272AT THE CATION-BINDING SITE A SMALL ION (NA+ OR K+) IS BOUND.

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1BOI)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1BOI)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1BOI)

(-) PROSITE Motifs  (3, 4)

Asymmetric/Biological Unit (3, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RHODANESE_3PS50206 Rhodanese domain profile.THTR_BOVIN25-143
173-288
  2A:24-142
A:172-287
2RHODANESE_1PS00380 Rhodanese signature 1.THTR_BOVIN48-59  1A:47-58
3RHODANESE_2PS00683 Rhodanese C-terminal signature.THTR_BOVIN269-279  1A:268-278

(-) Exons   (2, 2)

Asymmetric/Biological Unit (2, 2)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENSBTAT000000433171ENSBTAE00000421404chr5:81097900-81097144757THTR_BOVIN1-1991991A:8-198191
1.2ENSBTAT000000433172ENSBTAE00000379340chr5:81091785-81091320466THTR_BOVIN199-297991A:198-29396

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:286
 aligned with THTR_BOVIN | P00586 from UniProtKB/Swiss-Prot  Length:297

    Alignment length:286
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288      
           THTR_BOVIN     9 ALVSTKWLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKASPYEVMLPSEAGFADYVGSLGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGHPVTSEPSRPEPAIFKATLNRSLLKTYEQVLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDGFEKSPEELRAMFEAKKVDLTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPPETWVSQGKG 294
               SCOP domains d1boia1 A:8-149 Rhodanese                                                                                                                     d1boia2 A:150-293 Rhodanese                                                                                                                      SCOP domains
               CATH domains 1boiA01 A:8-156 Oxidized Rhodanese, domain 1                                                                                                         1boiA02 A:157-292 Oxidized Rhodanese, domain 1                                                                                          - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeehhhhhhhhh.......eeeee..........hhhhhhh...........................hhhhhhhhhhh......eeeee.........hhhhhhhhhh.....eeeee.hhhhhhh......................hhh...hhhhhhhhhh...eeee...hhhhh.......................hhhh.........hhhhhhhhhh........eeee.....hhhhhhhhhhhh..........hhhhhhhh..hhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------RHODANESE_3  PDB: A:24-142 UniProt: 25-143                                                                             -----------------------------RHODANESE_3  PDB: A:172-287 UniProt: 173-288                                                                        ------ PROSITE (1)
                PROSITE (2) ---------------------------------------RHODANESE_1 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RHODANESE_2--------------- PROSITE (2)
           Transcript 1 (1) Exon 1.1  PDB: A:8-198 UniProt: 1-199 [INCOMPLETE]                                                                                                                                             ----------------------------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.2  PDB: A:198-293 UniProt: 199-297 [INCOMPLETE]                                           Transcript 1 (2)
                 1boi A   8 ALVSTKWLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKASPYEVMLPSEAGFADYVGSLGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGHPVTSEPSRPEPAIFKATLNRSLLKTYEQVLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDGFEKSPEELRAMFEAKKVDLTKPLIATcRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPPETWVSQGKG 293
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287      
                                                                                                                                                                                                                                                                         247-CSS                                          

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 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1BOI)

(-) Gene Ontology  (13, 13)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (THTR_BOVIN | P00586)
molecular function
    GO:0008097    5S rRNA binding    Interacting selectively and non-covalently with 5S ribosomal RNA, the smallest RNA constituent of a ribosome.
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004792    thiosulfate sulfurtransferase activity    Catalysis of the reaction: hydrogen cyanide + thiosulfate = H(+) + sulfite + thiocyanate.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0030855    epithelial cell differentiation    The process in which a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium.
    GO:0035928    rRNA import into mitochondrion    The directed movement of rRNA, ribosomal ribonucleic acid, from the cytoplasm into a mitochondrion.
    GO:0051029    rRNA transport    The directed movement of rRNA, ribosomal ribonucleic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
cellular component
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005759    mitochondrial matrix    The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        THTR_BOVIN | P005861boh 1dp2 1orb 1rhd 1rhs 2ora

(-) Related Entries Specified in the PDB File

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