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(-) Description

Title :  COLLAGEN
 
Authors :  R. Z. Kramer, J. Bella, P. Mayville, B. Brodsky, H. M. Berman
Date :  13 Jul 98  (Deposition) - 16 Feb 99  (Release) - 22 Dec 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Collagen, Hydroxyproline, Hydrogen Bonding, Triple Helix, Type Iii Collagen, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Z. Kramer, J. Bella, P. Mayville, B. Brodsky, H. M. Berman
Sequence Dependent Conformational Variations Of Collagen Triple-Helical Structure.
Nat. Struct. Biol. V. 6 454 1999
PubMed-ID: 10331873  |  Reference-DOI: 10.1038/8259

(-) Compounds

Molecule 1 - T3-785
    Chains: A, B, C
    Engineered: YES
    Other Details: SYNTHETIC PEPTIDE CONTAINS REGION FROM HUMAN TYPE III COLLAGEN

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 26)

Asymmetric/Biological Unit (2, 26)
No.NameCountTypeFull Name
1ACY5Ligand/IonACETIC ACID
2HYP21Mod. Amino Acid4-HYDROXYPROLINE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG B:44 , HOH B:112 , HOH B:125 , ACY B:405BINDING SITE FOR RESIDUE ACY B 401
2AC2SOFTWAREARG A:14 , ILE C:70 , THR C:71 , HOH C:145 , HOH C:195BINDING SITE FOR RESIDUE ACY C 402
3AC3SOFTWAREHOH B:111 , ACY B:404 , HOH C:117 , HOH C:210BINDING SITE FOR RESIDUE ACY B 403
4AC4SOFTWARELEU A:16 , GLY B:51 , PRO B:52 , HYP B:53 , HOH B:119 , ACY B:403BINDING SITE FOR RESIDUE ACY B 404
5AC5SOFTWAREALA B:43 , ARG B:44 , HOH B:125 , HOH B:131 , ACY B:401BINDING SITE FOR RESIDUE ACY B 405

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1BKV)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Pro B:58 -Hyp B:59

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1BKV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1BKV)

(-) Exons   (0, 0)

(no "Exon" information available for 1BKV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:29
                                                            
               SCOP domains d1bkva_ A:                    SCOP domains
               CATH domains ----------------------------- CATH domains
               Pfam domains ----------------------------- Pfam domains
         Sec.struct. author ............................. Sec.struct. author
                 SAPs(SNPs) ----------------------------- SAPs(SNPs)
                    PROSITE ----------------------------- PROSITE
                 Transcript ----------------------------- Transcript
                  1bkv A  2 pGPpGPpGITGARGLAGPpGPpGPpGPpG 30
                            |  |  | 11        21 |  |  | 
                            |  |  |          20-HYP |  | 
                            2-HYP |             23-HYP | 
                               5-HYP               26-HYP
                                  8-HYP               29-HYP


Chain B from PDB  Type:PROTEIN  Length:30
                                                             
               SCOP domains d1bkvb_ B:                     SCOP domains
               CATH domains ------------------------------ CATH domains
               Pfam domains ------------------------------ Pfam domains
         Sec.struct. author .............................. Sec.struct. author
                 SAPs(SNPs) ------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------ PROSITE
                 Transcript ------------------------------ Transcript
                  1bkv B 31 PpGPpGPpGITGARGLAGPpGPpGPpGPpG 60
                             |  |  |40        50  |  |  60
                             |  |  |          50-HYP |  | 
                            32-HYP |             53-HYP | 
                               35-HYP               56-HYP
                                  38-HYP               59-HYP


Chain C from PDB  Type:PROTEIN  Length:30
                                                             
               SCOP domains d1bkvc_ C:                     SCOP domains
               CATH domains ------------------------------ CATH domains
               Pfam domains ------------------------------ Pfam domains
         Sec.struct. author .............................. Sec.struct. author
                 SAPs(SNPs) ------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------ PROSITE
                 Transcript ------------------------------ Transcript
                  1bkv C 61 PpGPpGPpGITGARGLAGPpGPpGPpGPpG 90
                             |  |  |70        80  |  |  90
                             |  |  |          80-HYP |  | 
                            62-HYP |             83-HYP | 
                               65-HYP               86-HYP
                                  68-HYP               89-HYP
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Class: Designed proteins (167)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1BKV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1BKV)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1BKV)

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