1BG8 - JenaLib

Asymmetric Unit (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   HDEA FROM ESCHERICHIA COLI

Authors :   F. Yang, K. R. Gustafson, M. R. Boyd, A. Wlodawer

Date :   05 Jun 98 (Deposition) - 16 Sep 98 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C  (2x)

Keywords :   Periplasmic, Hdea, Signal (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   F. Yang, K. R. Gustafson, M. R. Boyd, A. Wlodawer
Crystal Structure Of Escherichia Coli Hdea.
Nat. Struct. Biol. V. 5 763 1998
PubMed-ID: 9731767 | Reference-DOI: 10.1038/1796
(for further references see the PDB file header)

Molecule 1 - HDEA
	Chains	:	A, B, C
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562
	Synonym	:	10K-S PROTEIN, HYPOTHETICAL PROTEIN A

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (2x)	:			C

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 1BG8)

(no "Site" information available for 1BG8)

Asymmetric Unit

No.	Residues
1	A:18	-	A:66
2	B:18	-	B:66
3	C:18	-	C:66

(no "Cis Peptide Bond" information available for 1BG8)

(no "SAP(SNP)/Variant" information available for 1BG8)

(no "PROSITE Motif" information available for 1BG8)

(no "Exon" information available for 1BG8)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:76
 aligned with HDEA_ECO57 | P0AET0 from UniProtKB/Swiss-Prot  Length:110

    Alignment length:76
                                    40        50        60        70        80        90       100      
           HDEA_ECO57    31 KKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKI 106
               SCOP domains d1bg8a_ A: Protein HNS-dependent expression A; HdeA                          SCOP domains
               CATH domains 1bg8A00 A:10-85  [code=1.10.890.10, no name defined]                         CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhh..hhhhhh.....hhhhhhhhhhh............hhhhhhhhhhhhhhhh......hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                 1bg8 A  10 KKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKI  85
                                    19        29        39        49        59        69        79

Chain A from PDB  Type:PROTEIN  Length:76
 aligned with HDEA_ECOLI | P0AES9 from UniProtKB/Swiss-Prot  Length:110

    Alignment length:76
                                    40        50        60        70        80        90       100      
           HDEA_ECOLI    31 KKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKI 106
               SCOP domains d1bg8a_ A: Protein HNS-dependent expression A; HdeA                          SCOP domains
               CATH domains 1bg8A00 A:10-85  [code=1.10.890.10, no name defined]                         CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhh..hhhhhh.....hhhhhhhhhhh............hhhhhhhhhhhhhhhh......hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                 1bg8 A  10 KKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKI  85
                                    19        29        39        49        59        69        79

Chain A from PDB  Type:PROTEIN  Length:76
 aligned with HDEA_SHIFL | P0AET1 from UniProtKB/Swiss-Prot  Length:110

    Alignment length:76
                                    40        50        60        70        80        90       100      
           HDEA_SHIFL    31 KKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKI 106
               SCOP domains d1bg8a_ A: Protein HNS-dependent expression A; HdeA                          SCOP domains
               CATH domains 1bg8A00 A:10-85  [code=1.10.890.10, no name defined]                         CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhh..hhhhhh.....hhhhhhhhhhh............hhhhhhhhhhhhhhhh......hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                 1bg8 A  10 KKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKI  85
                                    19        29        39        49        59        69        79

Chain B from PDB  Type:PROTEIN  Length:76
 aligned with HDEA_ECO57 | P0AET0 from UniProtKB/Swiss-Prot  Length:110

    Alignment length:76
                                    40        50        60        70        80        90       100      
           HDEA_ECO57    31 KKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKI 106
               SCOP domains d1bg8b_ B: Protein HNS-dependent expression A; HdeA                          SCOP domains
               CATH domains 1bg8B00 B:10-85  [code=1.10.890.10, no name defined]                         CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhh..hhhhhh..hhhhhhhhhhhhhh............hhhhhhhhhhhhhhhh......hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                 1bg8 B  10 KKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKI  85
                                    19        29        39        49        59        69        79

Chain B from PDB  Type:PROTEIN  Length:76
 aligned with HDEA_ECOLI | P0AES9 from UniProtKB/Swiss-Prot  Length:110

    Alignment length:76
                                    40        50        60        70        80        90       100      
           HDEA_ECOLI    31 KKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKI 106
               SCOP domains d1bg8b_ B: Protein HNS-dependent expression A; HdeA                          SCOP domains
               CATH domains 1bg8B00 B:10-85  [code=1.10.890.10, no name defined]                         CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhh..hhhhhh..hhhhhhhhhhhhhh............hhhhhhhhhhhhhhhh......hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                 1bg8 B  10 KKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKI  85
                                    19        29        39        49        59        69        79

Chain B from PDB  Type:PROTEIN  Length:76
 aligned with HDEA_SHIFL | P0AET1 from UniProtKB/Swiss-Prot  Length:110

    Alignment length:76
                                    40        50        60        70        80        90       100      
           HDEA_SHIFL    31 KKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKI 106
               SCOP domains d1bg8b_ B: Protein HNS-dependent expression A; HdeA                          SCOP domains
               CATH domains 1bg8B00 B:10-85  [code=1.10.890.10, no name defined]                         CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhh..hhhhhh..hhhhhhhhhhhhhh............hhhhhhhhhhhhhhhh......hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                 1bg8 B  10 KKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKI  85
                                    19        29        39        49        59        69        79

Chain C from PDB  Type:PROTEIN  Length:76
 aligned with HDEA_ECO57 | P0AET0 from UniProtKB/Swiss-Prot  Length:110

    Alignment length:76
                                    40        50        60        70        80        90       100      
           HDEA_ECO57    31 KKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKI 106
               SCOP domains d1bg8c_ C: Protein HNS-dependent expression A; HdeA                          SCOP domains
               CATH domains 1bg8C00 C:10-85  [code=1.10.890.10, no name defined]                         CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhh..hhhhhh..hhhhhhhhhhhhhh............hhhhhhhhhhhhhhhh......hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                 1bg8 C  10 KKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKI  85
                                    19        29        39        49        59        69        79

Chain C from PDB  Type:PROTEIN  Length:76
 aligned with HDEA_ECOLI | P0AES9 from UniProtKB/Swiss-Prot  Length:110

    Alignment length:76
                                    40        50        60        70        80        90       100      
           HDEA_ECOLI    31 KKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKI 106
               SCOP domains d1bg8c_ C: Protein HNS-dependent expression A; HdeA                          SCOP domains
               CATH domains 1bg8C00 C:10-85  [code=1.10.890.10, no name defined]                         CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhh..hhhhhh..hhhhhhhhhhhhhh............hhhhhhhhhhhhhhhh......hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                 1bg8 C  10 KKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKI  85
                                    19        29        39        49        59        69        79

Chain C from PDB  Type:PROTEIN  Length:76
 aligned with HDEA_SHIFL | P0AET1 from UniProtKB/Swiss-Prot  Length:110

    Alignment length:76
                                    40        50        60        70        80        90       100      
           HDEA_SHIFL    31 KKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKI 106
               SCOP domains d1bg8c_ C: Protein HNS-dependent expression A; HdeA                          SCOP domains
               CATH domains 1bg8C00 C:10-85  [code=1.10.890.10, no name defined]                         CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhh..hhhhhh..hhhhhhhhhhhhhh............hhhhhhhhhhhhhhhh......hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                 1bg8 C  10 KKPVNSWTCEDFLAVDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKI  85
                                    19        29        39        49        59        69        79

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: Protein HNS-dependent expression A; HdeA (2)

Superfamily: Protein HNS-dependent expression A; HdeA (2)

Family: Protein HNS-dependent expression A; HdeA (2)

Protein domain: Protein HNS-dependent expression A; HdeA (2)

Escherichia coli [TaxId: 562] (2)

1a	d1bg8a_	A:
1b	d1bg8b_	B:
1c	d1bg8c_	C:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: 10k-s Protein, Hypothetical Protein A; Chain A (9)

Homologous Superfamily: [code=1.10.890.10, no name defined] (2)

Escherichia coli. Organism_taxid: 562 (1)

1a	1bg8A00	A:10-85
1b	1bg8B00	B:10-85
1c	1bg8C00	C:10-85

(no "Pfam Domain" information available for 1BG8)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C (HDEA_ECOLI | P0AES9)

molecular function
	GO:0051087	chaperone binding	Interacting selectively and non-covalently with a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport.
biological process
	GO:0071468	cellular response to acidic pH	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus with pH < 7. pH is a measure of the acidity or basicity of an aqueous solution.
	GO:0033554	cellular response to stress	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
cellular component
	GO:0030288	outer membrane-bounded periplasmic space	The region between the inner (cytoplasmic or plasma) membrane and outer membrane of organisms with two membranes such as Gram negative bacteria. These periplasmic spaces are relatively thick and contain a thin peptidoglycan layer (PGL), also referred to as a thin cell wall.
	GO:0042597	periplasmic space	The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

Chain A,B,C (HDEA_SHIFL | P0AET1)

biological process
	GO:0071468	cellular response to acidic pH	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus with pH < 7. pH is a measure of the acidity or basicity of an aqueous solution.
	GO:0033554	cellular response to stress	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
cellular component
	GO:0030288	outer membrane-bounded periplasmic space	The region between the inner (cytoplasmic or plasma) membrane and outer membrane of organisms with two membranes such as Gram negative bacteria. These periplasmic spaces are relatively thick and contain a thin peptidoglycan layer (PGL), also referred to as a thin cell wall.
	GO:0042597	periplasmic space	The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

Chain A,B,C (HDEA_ECO57 | P0AET0)

biological process
	GO:0071468	cellular response to acidic pH	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus with pH < 7. pH is a measure of the acidity or basicity of an aqueous solution.
	GO:0033554	cellular response to stress	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
cellular component
	GO:0030288	outer membrane-bounded periplasmic space	The region between the inner (cytoplasmic or plasma) membrane and outer membrane of organisms with two membranes such as Gram negative bacteria. These periplasmic spaces are relatively thick and contain a thin peptidoglycan layer (PGL), also referred to as a thin cell wall.
	GO:0042597	periplasmic space	The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

Asymmetric Unit
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	Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 1bg8)

	Sites
(no "Sites" information available for 1bg8)

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1bg8)

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		Biological Unit 2	[ Jena3D ]

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	1bg8
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Access by UniProt ID/Accession number
	HDEA_ECO57 \| P0AET0
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	HDEA_ECOLI \| P0AES9
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	HDEA_SHIFL \| P0AET1
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	HDEA_ECO57 \| P0AET0	:	1dj8
	HDEA_ECOLI \| P0AES9	:	1dj8
	HDEA_SHIFL \| P0AET1	:	1dj8

(no "Related Entries Specified in the PDB File" available for 1BG8)

Description

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Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (3, 3)

Cis Peptide Bonds (0, 0)

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SCOP Domains (1, 3)

CATH Domains (1, 3)

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Gene Ontology (5, 13)

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