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(-) Description

Title :  RETRO-INVERSO ANALOGUE OF THE G-H LOOP OF VP1 IN FOOT-AND-MOUTH-DISEASE (FMD) VIRUS, NMR, 10 STRUCTURES
 
Authors :  M. C. Petit, N. Benkirane, G. Guichard, A. Phan Chan Du, M. T. Cung, J. P. Briand, S. Muller
Date :  22 May 98  (Deposition) - 13 Jan 99  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (10x)
Keywords :  Capsid, Peptidomimetic, Retro-Inverso, Fmdv, Antigen, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. C. Petit, N. Benkirane, G. Guichard, A. P. Du, M. Marraud, M. T. Cung, J. P. Briand, S. Muller
Solution Structure Of A Retro-Inverso Peptide Analogue Mimicking The Foot-And-Mouth Disease Virus Major Antigenic Site. Structural Basis For Its Antigenic Cross-Reactivity With The Parent Peptide.
J. Biol. Chem. V. 274 3686 1999
PubMed-ID: 9920919  |  Reference-DOI: 10.1074/JBC.274.6.3686
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - VP1 PROTEIN
    Chains: A
    Engineered: YES
    Fragment: THE MAJOR IMMUNOGEN REGION, RESIDUES 141-159
    Other Details: RETRO-INVERSO PEPTIDE CORRESPONDING TO THE MAJOR IMMUNOGEN REGION OF THE FOOT-AND-MOUTH-DISEASE VIRUS CAPSID

 Structural Features

(-) Chains, Units

  
NMR Structure (10x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (11, 16)

NMR Structure (11, 16)
No.NameCountTypeFull Name
1DAL2Mod. Amino AcidD-ALANINE
2DAR3Mod. Amino AcidD-ARGININE
3DAS1Mod. Amino AcidD-ASPARTIC ACID
4DGN1Mod. Amino AcidD-GLUTAMINE
5DLE1Mod. Amino AcidD-LEUCINE
6DPN1Mod. Amino AcidD-PHENYLALANINE
7DPR1Mod. Amino AcidD-PROLINE
8DSN2Mod. Amino AcidD-SERINE
9DVA2Mod. Amino AcidD-VALINE
10LML1Mod. Amino AcidISOBUTYL MALONIC ACID
11NH21Mod. Amino AcidAMINO GROUP

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:20
                                                    
               SCOP domains -------------------- SCOP domains
               CATH domains -------------------- CATH domains
               Pfam domains -------------------- Pfam domains
         Sec.struct. author .................... Sec.struct. author
                 SAPs(SNPs) -------------------- SAPs(SNPs)
                    PROSITE -------------------- PROSITE
                 Transcript -------------------- Transcript
                 1bfw A 159 xxxxxxxxxxGxxGxxGxGx 140
                            |||||||150|||||||140
                            ||||||151-DLE||142-DSN
                          159-LML||150-DSN||141|
                           158-DGN||149||||||140-NH2
                            157-DAR| 148-DPN|   
                             156-DAL  147-DAS   
                              155-DVA  146|||   
                               154-DAR  145-DAR 
                                153-DPR  144-DVA
                                 152-DAL  143
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NMR Structure(hide GO term definitions)
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