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(-) Description

Title :  NMR STRUCTURE OF HEPARIN BINDING SITE OF NON COLLAGENOUS DOMAIN I (NC1) OF COLLAGEN FACIT XIV
 
Authors :  R. Montserret, G. Deleage, F. Penin
Date :  15 Feb 99  (Deposition) - 25 Feb 99  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A
Keywords :  Collagen Facit Xiv, Heparin-Binding Site, Nc1 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Montserret, E. Aubert-Foucher, M. J. Mcleish, J. M. Hill, D. Ficheux, M. Jaquinod, M. Van Der Rest, G. Deleage, F. Penin
Structural Analysis Of The Heparin-Binding Site Of The Nc1 Domain Of Collagen Xiv By Cd And Nmr.
Biochemistry V. 38 6479 1999
PubMed-ID: 10350466  |  Reference-DOI: 10.1021/BI9900222
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTEIN (COLLAGEN ALPHA 1)
    Chains: A
    Engineered: YES
    Fragment: FRAGMENT 84-116 OF NC1 (HEPARIN BINDING SITE)
    Mutation: YES
    Other Details: THE PROTEIN WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE OF THIS PROTEIN IS NATURALLY FOUND EXTRACELLULARLY IN THE EMBRYO OF GALLUS GALLUS (CHICKEN).
    Synonym: ALPHA 1 TYPE XIV COLLAGEN
    Synthetic: YES

 Structural Features

(-) Chains, Units

  
NMR Structure : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1B9P)

(-) Sites  (0, 0)

(no "Site" information available for 1B9P)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1B9P)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1B9P)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1B9P)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1B9P)

(-) Exons   (0, 0)

(no "Exon" information available for 1B9P)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:34
 aligned with COEA1_CHICK | P32018 from UniProtKB/Swiss-Prot  Length:1888

    Alignment length:34
                                  1861      1871      1881    
         COEA1_CHICK   1852 EAVELRSPGISRFRRKIAKRSIKTLEHKRENAKE 1885
               SCOP domains d1b9pa_ A:                         SCOP domains
               CATH domains ---------------------------------- CATH domains
               Pfam domains ---------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------- PROSITE
                 Transcript ---------------------------------- Transcript
                1b9p A    1 CAVELRSPGISRFRRKIAKRSIKTLEHKRENAKE   34
                                    10        20        30
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Peptides (792)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1B9P)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1B9P)

(-) Gene Ontology  (4, 4)

NMR Structure(hide GO term definitions)
Chain A   (COEA1_CHICK | P32018)
biological process
    GO:0007155    cell adhesion    The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
cellular component
    GO:0005581    collagen trimer    A protein complex consisting of three collagen chains assembled into a left-handed triple helix. These trimers typically assemble into higher order structures.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005578    proteinaceous extracellular matrix    A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity. An example of this component is found in Mus musculus.

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  1b9p
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        COEA1_CHICK | P32018: 1b9q

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