1ARZ - JenaLib

Asym./Biol. Unit - manually (Jmol Viewer)

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   ESCHERICHIA COLI DIHYDRODIPICOLINATE REDUCTASE IN COMPLEX WITH NADH AND 2,6 PYRIDINE DICARBOXYLATE

Authors :   G. Scapin, S. G. Reddy, R. Zheng, J. S. Blanchard

Date :   08 Aug 97 (Deposition) - 14 Oct 98 (Release) - 30 Oct 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.60

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Oxidoreductase, Reductase, Lysine Biosynthesis, Nadh Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   G. Scapin, S. G. Reddy, R. Zheng, J. S. Blanchard
Three-Dimensional Structure Of Escherichia Coli Dihydrodipicolinate Reductase In Complex With Nadh And The Inhibitor 2, 6-Pyridinedicarboxylate.
Biochemistry V. 36 15081 1997
PubMed-ID: 9398235 | Reference-DOI: 10.1021/BI9719915
(for further references see the PDB file header)

Molecule 1 - DIHYDRODIPICOLINATE REDUCTASE
	Cell Line	:	BL21
	Chains	:	A, B, C, D
	EC Number	:	1.3.1.26
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET3D
	Expression System Strain	:	BL21 (DE3)
	Expression System Taxid	:	469008
	Gene	:	DAPB
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	83333
	Strain	:	K12
	Synonym	:	DHPR

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (4, 9)

No.	Name	Count	Type	Full Name
1	K	2	Ligand/Ion	POTASSIUM ION
2	NAI	3	Ligand/Ion	1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
3	PDC	3	Ligand/Ion	PYRIDINE-2,6-DICARBOXYLIC ACID
4	PO4	1	Ligand/Ion	PHOSPHATE ION

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:160 , LYS A:163 , VAL A:217 , ARG A:240	BINDING SITE FOR RESIDUE PO4 A 301
2	AC2	SOFTWARE	ALA B:25 , LEU B:26 , LEU B:28 , VAL B:31 , HOH B:411	BINDING SITE FOR RESIDUE K B 301
3	AC3	SOFTWARE	GLY B:12 , GLY B:14 , GLY B:15 , ARG B:16 , MET B:17 , GLU B:38 , PHE B:79 , THR B:80 , ARG B:81 , GLY B:84 , HIS B:88 , GLY B:102 , THR B:104 , ALA B:127 , ASN B:128 , PHE B:129 , LYS B:163 , PHE B:243 , PDC B:303 , HOH B:415 , HOH B:425	BINDING SITE FOR RESIDUE NAI B 302
4	AC4	SOFTWARE	THR B:104 , ALA B:127 , HIS B:160 , LYS B:163 , SER B:168 , GLY B:169 , THR B:170 , NAI B:302 , HOH B:425 , HOH B:435	BINDING SITE FOR RESIDUE PDC B 303
5	AC5	SOFTWARE	HOH B:404 , GLY C:12 , GLY C:15 , ARG C:16 , MET C:17 , GLU C:38 , PHE C:79 , THR C:80 , ARG C:81 , GLY C:84 , GLY C:102 , THR C:103 , THR C:104 , ALA C:127 , PHE C:129 , LYS C:163 , PHE C:243 , PDC C:302 , HOH C:406 , HOH C:410 , HOH C:422 , HOH C:423 , HOH C:439	BINDING SITE FOR RESIDUE NAI C 301
6	AC6	SOFTWARE	THR C:104 , ALA C:127 , HIS C:160 , LYS C:163 , SER C:168 , GLY C:169 , THR C:170 , NAI C:301 , HOH C:439	BINDING SITE FOR RESIDUE PDC C 302
7	AC7	SOFTWARE	ASP D:3 , ALA D:25 , LEU D:26 , LEU D:28 , VAL D:31	BINDING SITE FOR RESIDUE K D 301
8	AC8	SOFTWARE	GLY D:12 , GLY D:14 , GLY D:15 , ARG D:16 , MET D:17 , GLU D:38 , ARG D:39 , PHE D:79 , THR D:80 , ARG D:81 , GLY D:84 , GLY D:102 , THR D:103 , THR D:104 , ALA D:127 , ASN D:128 , PHE D:129 , LYS D:163 , PHE D:243 , PDC D:303 , HOH D:426 , HOH D:433 , HOH D:440	BINDING SITE FOR RESIDUE NAI D 302
9	AC9	SOFTWARE	THR D:104 , ALA D:127 , HIS D:160 , LYS D:163 , SER D:168 , GLY D:169 , THR D:170 , NAI D:302 , HOH D:413 , HOH D:415 , HOH D:433	BINDING SITE FOR RESIDUE PDC D 303

(no "SS Bond" information available for 1ARZ)

Asymmetric/Biological Unit

No.	Residues
1	Ala A:166	-	Pro A:167
2	Ala B:166	-	Pro B:167
3	Ala C:166	-	Pro C:167
4	Ala D:166	-	Pro D:167

(no "SAP(SNP)/Variant" information available for 1ARZ)

Asymmetric/Biological Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	DAPB	PS01298	Dihydrodipicolinate reductase signature.	DAPB_ECOLI	154-171	4	A:154-171 B:154-171 C:154-171 D:154-171

(no "Exon" information available for 1ARZ)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:270
 aligned with DAPB_ECOLI | P04036 from UniProtKB/Swiss-Prot  Length:273

    Alignment length:270
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273
           DAPB_ECOLI     4 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAADIAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHTGERVPGTIGFATVRAGDIVGEHTAMFADIGERLEITHKASSRMTFANGAVRSALWLSGKESGLFDMRDVLDLNNL 273
               SCOP domains d1arza1 A:4-130,A:241-273 Dihydrodipicolinate reductase                                                                        d1arza2 A:131-240 Dihydrodipicolinate reductase                                                               d1arza1 A:4-130,A:241-273         SCOP domains
               CATH domains 1arzA01 A:4-130,A:239-273 NAD(P)-binding Rossmann-like Domain                                                                  1arzA02 A:131-238 Dihydrodipicolinate Reductase; domain 2                                                   1arzA01 A:4-130,A:239-273           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ............hhhhhhhhhhhh.....................hhhh.............hhhhhh..........hhhhhhhhhhhhhh............hhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhh....eeeeeeee.........hhhhhhhhhhhhhh...hhhh................eeeeeee.....eeeeeeee....eeeeeeee..hhhhhhhhhhhhhhhhh.......hhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------DAPB              ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1arz A   4 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAADIAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHTGERVPGTIGFATVRAGDIVGEHTAMFADIGERLEITHKASSRMTFANGAVRSALWLSGKESGLFDMRDVLDLNNL 273
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273

Chain B from PDB  Type:PROTEIN  Length:269
 aligned with DAPB_ECOLI | P04036 from UniProtKB/Swiss-Prot  Length:273

    Alignment length:269
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264         
           DAPB_ECOLI     5 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAADIAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHTGERVPGTIGFATVRAGDIVGEHTAMFADIGERLEITHKASSRMTFANGAVRSALWLSGKESGLFDMRDVLDLNNL 273
               SCOP domains d1arzb1 B:5-130,B:241-273 Dihydrodipicolinate reductase                                                                       d1arzb2 B:131-240 Dihydrodipicolinate reductase                                                               d1arzb1 B:5-130,B:241-273         SCOP domains
               CATH domains 1arzB01 B:5-130,B:239-273 NAD(P)-binding Rossmann-like Domain                                                                 1arzB02 B:131-238 Dihydrodipicolinate Reductase; domain 2                                                   1arzB01 B:5-130,B:239-273           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....hhhhhhhhhhhh...eeeeee............hhhh.............hhhh.....eeee...hhhhhhhhhhhhh...eeee......hhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhhhhh....eeeeeeee.........hhhhhhhhhhhhhh...hhhh................eeeeeee.....eeeeeeee....eeeeeeee..hhhhhhhhhhhhhhh.....eee.hhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------DAPB              ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1arz B   5 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAADIAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHTGERVPGTIGFATVRAGDIVGEHTAMFADIGERLEITHKASSRMTFANGAVRSALWLSGKESGLFDMRDVLDLNNL 273
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264

Chain C from PDB  Type:PROTEIN  Length:271
 aligned with DAPB_ECOLI | P04036 from UniProtKB/Swiss-Prot  Length:273

    Alignment length:271
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272 
           DAPB_ECOLI     3 DANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAADIAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHTGERVPGTIGFATVRAGDIVGEHTAMFADIGERLEITHKASSRMTFANGAVRSALWLSGKESGLFDMRDVLDLNNL 273
               SCOP domains d1arzc1 C:3-130,C:241-273 Dihydrodipicolinate reductase                                                                         d1arzc2 C:131-240 Dihydrodipicolinate reductase                                                               d1arzc1 C:3-130,C:241-273         SCOP domains
               CATH domains 1arzC01 C:3-130,C:239-273 NAD(P)-binding Rossmann-like Domain                                                                   1arzC02 C:131-238 Dihydrodipicolinate Reductase; domain 2                                                   1arzC01 C:3-130,C:239-273           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee.....hhhhhhhhhhhh....eeeee............hhhh.............hhhh.....eeee...hhhhhhhhhhhhh...eeee......hhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhhhhh....eeeeeeee.........hhhhhhhhhhhhhh...hhhh................eeeeeee.....eeeeeeee....eeeeeeee..hhhhhhhhhhhhhhh.....eee.hhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------DAPB              ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1arz C   3 DANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAADIAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHTGERVPGTIGFATVRAGDIVGEHTAMFADIGERLEITHKASSRMTFANGAVRSALWLSGKESGLFDMRDVLDLNNL 273
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272

Chain D from PDB  Type:PROTEIN  Length:271
 aligned with DAPB_ECOLI | P04036 from UniProtKB/Swiss-Prot  Length:273

    Alignment length:271
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272 
           DAPB_ECOLI     3 DANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAADIAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHTGERVPGTIGFATVRAGDIVGEHTAMFADIGERLEITHKASSRMTFANGAVRSALWLSGKESGLFDMRDVLDLNNL 273
               SCOP domains d1arzd1 D:3-130,D:241-273 Dihydrodipicolinate reductase                                                                         d1arzd2 D:131-240 Dihydrodipicolinate reductase                                                               d1arzd1 D:3-130,D:241-273         SCOP domains
               CATH domains 1arzD01 D:3-130,D:239-273 NAD(P)-binding Rossmann-like Domain                                                                   1arzD02 D:131-238 Dihydrodipicolinate Reductase; domain 2                                                   1arzD01 D:3-130,D:239-273           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee.....hhhhhhhhhhhh.....................hhhh.............hhhh.....eeee...hhhhhhhhhhhhh...eeee......hhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhhhhh....eeeeeeee.........hhhhhhhhhhhhhh...hhhh................eeeeeee.....eeeeeeee....eeeeeeee..hhhhhhhhhhhhhhh.....eee.hhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------DAPB              ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1arz D   3 DANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAADIAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHTGERVPGTIGFATVRAGDIVGEHTAMFADIGERLEITHKASSRMTFANGAVRSALWLSGKESGLFDMRDVLDLNNL 273
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: FwdE/GAPDH domain-like (188)

Superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (179)

Family: Dihydrodipicolinate reductase-like (45)

Protein domain: Dihydrodipicolinate reductase (11)

Escherichia coli [TaxId: 562] (5)

1a	d1arza2	A:131-240
1b	d1arzb2	B:131-240
1c	d1arzc2	C:131-240
1d	d1arzd2	D:131-240

Class: Alpha and beta proteins (a/b) (23833)

Fold: NAD(P)-binding Rossmann-fold domains (1604)

Superfamily: NAD(P)-binding Rossmann-fold domains (1604)

Family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain (179)

Protein domain: Dihydrodipicolinate reductase (11)

Escherichia coli [TaxId: 562] (5)

2a	d1arza1	A:4-130,A:241-273
2b	d1arzb1	B:5-130,B:241-273
2c	d1arzc1	C:3-130,C:241-273
2d	d1arzd1	D:3-130,D:241-273

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Dihydrodipicolinate Reductase; domain 2 (182)

Homologous Superfamily: Dihydrodipicolinate Reductase; domain 2 (178)

Escherichia coli k12. Organism_taxid: 83333. Strain: k12. Cell_line: bl21. (1)

1a	1arzA02	A:131-238
1b	1arzB02	B:131-238
1c	1arzC02	C:131-238
1d	1arzD02	D:131-238

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: NAD(P)-binding Rossmann-like Domain (1244)

Escherichia coli k12. Organism_taxid: 83333. Strain: k12. Cell_line: bl21. (1)

2a	1arzC01	C:3-130,C:239-273
2b	1arzD01	D:3-130,D:239-273
2c	1arzA01	A:4-130,A:239-273
2d	1arzB01	B:5-130,B:239-273

(no "Pfam Domain" information available for 1ARZ)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D (DAPB_ECOLI | P04036)

molecular function
	GO:0008839	4-hydroxy-tetrahydrodipicolinate reductase	Catalysis of the reaction: (S)-2,3,4,5-tetrahydropyridine-2,6-dicarboxylate + NAD(P)+ + H2O = (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate + NAD(P)H + H+.
	GO:0051287	NAD binding	Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
	GO:0050661	NADP binding	Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH.
	GO:0042802	identical protein binding	Interacting selectively and non-covalently with an identical protein or proteins.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016726	oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor	Catalysis of an oxidation-reduction (redox) reaction in which a CH2 group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
biological process
	GO:0008652	cellular amino acid biosynthetic process	The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
	GO:0019877	diaminopimelate biosynthetic process	The chemical reactions and pathways resulting in the formation of diaminopimelate, both as an intermediate in lysine biosynthesis and as a component (as meso-diaminopimelate) of the peptidoglycan of Gram-negative bacterial cell walls.
	GO:0009085	lysine biosynthetic process	The chemical reactions and pathways resulting in the formation of lysine, 2,6-diaminohexanoic acid.
	GO:0009089	lysine biosynthetic process via diaminopimelate	The chemical reactions and pathways resulting in the formation of lysine, via the intermediate diaminopimelate.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Ala A:166 - Pro A:167	[ RasMol ]
		Ala B:166 - Pro B:167	[ RasMol ]
		Ala C:166 - Pro C:167	[ RasMol ]
		Ala D:166 - Pro D:167	[ RasMol ]

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	1arz
		Family and Domain Information	:	ProDom \| SYSTERS
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	DAPB_ECOLI \| P04036
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	1.3.1.26
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	DAPB_ECOLI \| P04036	:	1dih 1dru 1drv 1drw

(no "Related Entries Specified in the PDB File" available for 1ARZ)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 9)

Sites (9, 9)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 4)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (2, 8)

CATH Domains (2, 8)

Pfam Domains (0, 0)

Gene Ontology (13, 13)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File