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(-) Description

Title :  SINGLE CHAIN FV OF C219
 
Authors :  P. J. Hoedemaeker, D. R. Rose
Date :  23 Jul 97  (Deposition) - 24 Dec 97  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.36
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Single Chain Fv, Monoclonal Antibody, C219, P-Glycoprotein, Immunoglobulin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. J. Hoedemaeker, T. Signorelli, K. Johns, D. A. Kuntz, D. R. Rose
A Single Chain Fv Fragment Of P-Glycoprotein-Specific Monoclonal Antibody C219. Design, Expression, And Crystal Structure At 2. 4 A Resolution.
J. Biol. Chem. V. 272 29784 1997
PubMed-ID: 9368049  |  Reference-DOI: 10.1074/JBC.272.47.29784
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - MONOCLONAL ANTIBODY C219
    Chains: A, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Cellular Location: PERIPLASMIC
    Expression System Plasmid: PSJF2
    Expression System Strain: TG1
    Expression System Taxid: 562
    Fragment: FV
    Gene: CDNA
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Other Details: LIGHT AND HEAVY CHAINS LINKED WITH A SYNTHETIC (GGGGS)3 LINKER
    Synonym: VARIABLE DOMAIN
 
Molecule 2 - MONOCLONAL ANTIBODY C219
    Chains: B, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Cellular Location: PERIPLASMIC
    Expression System Plasmid: PSJF2
    Expression System Strain: TG1
    Expression System Taxid: 562
    Fragment: FV
    Gene: CDNA
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Other Details: LIGHT AND HEAVY CHAINS LINKED WITH A SYNTHETIC (GGGGS)3 LINKER
    Synonym: VARIABLE DOMAIN

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1AP2)

(-) Sites  (0, 0)

(no "Site" information available for 1AP2)

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:23 -A:94
2B:22 -B:96
3C:23 -C:94
4D:22 -D:96

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Ser A:7 -Pro A:8
2Tyr A:100 -Pro A:101
3Ser C:7 -Pro C:8
4Tyr C:100 -Pro C:101

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1AP2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1AP2)

(-) Exons   (0, 0)

(no "Exon" information available for 1AP2)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:112
                                                                                                                                                
               SCOP domains d1ap2a_ A: Immunoglobulin light chain kappa variable domain, VL-kappa                                            SCOP domains
               CATH domains 1ap2A00 A:1-112 Immunoglobulins                                                                                  CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eee......eeeeeee.............eeeeee......eeeee............eeeeee..eeeeee....hhh..eeeeee............eee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 1ap2 A   1 DIVMTQSPSSLTVTAGEKVTMSCKSSQSLLNSGNQKNYLTWYQQKPGQPPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCQNDYSYPLTFGAGTKLEP 112
                                    10        20        30        40        50        60        70        80        90       100       110  


Chain B from PDB  Type:PROTEIN  Length:120
                                                                                                                                                        
               SCOP domains d1ap2b_ B: Immunoglobulin heavy chain variable domain, VH                                                                SCOP domains
               CATH domains 1ap2B00 B:1-120 Immunoglobulins                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee...........eeeeeeee...hhheeeeeeee.....eeeeeeee.....eee.......eeeeeehhh.eeeeee....hhh.eeeeeeeee..............eee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ap2 B   1 EVQLQQSGAELVRPGASVKLSCTASGFNIKDDFMHWVKQRPEQGLEWIGRIDPANDNTKYAPKFQDKATIIADTSSNTAYLQLSSLTSEDTAVYYCARREVYSYYSPLDVWGAGTTVTVP 120
                                    10        20        30        40        50        60        70        80        90       100       110       120


Chain C from PDB  Type:PROTEIN  Length:113
                                                                                                                                                 
               SCOP domains d1ap2c_ C: Immunoglobulin light chain kappa variable domain, VL-kappa                                             SCOP domains
               CATH domains 1ap2C00 C:1-113 Immunoglobulins                                                                                   CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eee......eeeeeee.............eeeeee......eeee.....................eeeeee....hhh..eeeeee............eee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 1ap2 C   1 DIVMTQSPSSLTVTAGEKVTMSCKSSQSLLNSGNQKNYLTWYQQKPGQPPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCQNDYSYPLTFGAGTKLEPG 113
                                    10        20        30        40        50        60        70        80        90       100       110   


Chain D from PDB  Type:PROTEIN  Length:123
                                                                                                                                                           
               SCOP domains d1ap2d_ D: Immunoglobulin heavy chain variable domain, VH                                                                   SCOP domains
               CATH domains 1ap2D00 D:1-123 Immunoglobulins                                                                                             CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...eee.....eeeeeeee...hhheeeeeeeee....eeeeeeee....eeee.hhh.............eeeeee........eeeeeeeee..............eeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ap2 D   1 EVQLQQSGAELVRPGASVKLSCTASGFNIKDDFMHWVKQRPEQGLEWIGRIDPANDNTKYAPKFQDKATIIADTSSNTAYLQLSSLTSEDTAVYYCARREVYSYYSPLDVWGAGTTVTVPSGS 123
                                    10        20        30        40        50        60        70        80        90       100       110       120
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1AP2)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1AP2)

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  Cis Peptide Bonds
    Ser A:7 - Pro A:8   [ RasMol ]  
    Ser C:7 - Pro C:8   [ RasMol ]  
    Tyr A:100 - Pro A:101   [ RasMol ]  
    Tyr C:100 - Pro C:101   [ RasMol ]  
 
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  1ap2
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 Related Entries

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