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(-) Description

Title :  STRUCTURE OF A HYPERTHERMOPHILIC TUNGSTOPTERIN ENZYME, ALDEHYDE FERREDOXIN OXIDOREDUCTASE
 
Authors :  M. K. Chan, S. Mukund, A. Kletzin, M. W. W. Adams, D. C. Rees
Date :  13 Feb 95  (Deposition) - 20 Apr 95  (Release) - 24 Mar 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. K. Chan, S. Mukund, A. Kletzin, M. W. Adams, D. C. Rees
Structure Of A Hyperthermophilic Tungstopterin Enzyme, Aldehyde Ferredoxin Oxidoreductase.
Science V. 267 1463 1995
PubMed-ID: 7878465
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ALDEHYDE FERREDOXIN OXIDOREDUCTASE
    Chains: A, B
    Engineered: YES
    Organism Scientific: PYROCOCCUS FURIOSUS
    Organism Taxid: 2261

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 7)

Asymmetric/Biological Unit (4, 7)
No.NameCountTypeFull Name
1FE1Ligand/IonFE (III) ION
2NA2Ligand/IonSODIUM ION
3PTE2Ligand/IonTUNGSTOPTERIN COFACTOR
4SF42Ligand/IonIRON/SULFUR CLUSTER

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:332 , HIS A:383 , GLU B:332 , HIS B:383BINDING SITE FOR RESIDUE FE A 606
2AC2SOFTWAREHIS A:181 , PTE A:609 , HOH A:5011 , HOH A:5012 , HOH A:5013BINDING SITE FOR RESIDUE NA A 607
3AC3SOFTWAREHIS B:181 , PTE B:608 , HOH B:5024 , HOH B:5025 , HOH B:5026BINDING SITE FOR RESIDUE NA B 606
4AC4SOFTWARETHR A:73 , ARG A:76 , ARG A:182 , CYS A:288 , CYS A:291 , CYS A:295 , CYS A:494 , PHE A:496 , PTE A:609BINDING SITE FOR RESIDUE SF4 A 608
5AC5SOFTWAREARG A:76 , ALA A:92 , ASN A:93 , SER A:94 , GLY A:95 , ARG A:182 , ALA A:183 , GLY A:185 , ARG A:186 , GLU A:311 , GLU A:313 , ASP A:338 , LEU A:342 , ASP A:343 , THR A:344 , ARG A:444 , HIS A:448 , ILE A:449 , LYS A:450 , ASP A:489 , LEU A:493 , CYS A:494 , LEU A:495 , PHE A:496 , NA A:607 , SF4 A:608 , HOH A:5012 , HOH A:5115BINDING SITE FOR RESIDUE PTE A 609
6AC6SOFTWAREARG B:76 , CYS B:288 , CYS B:291 , CYS B:295 , CYS B:494 , PHE B:496BINDING SITE FOR RESIDUE SF4 B 607
7AC7SOFTWAREARG B:76 , ALA B:92 , ASN B:93 , SER B:94 , GLY B:95 , ARG B:182 , ALA B:183 , ALA B:184 , GLY B:185 , ARG B:186 , GLU B:311 , GLU B:313 , ASP B:338 , LEU B:342 , ASP B:343 , THR B:344 , ARG B:444 , ILE B:449 , LYS B:450 , ASP B:489 , LEU B:493 , CYS B:494 , LEU B:495 , PHE B:496 , NA B:606 , HOH B:5026 , HOH B:5032BINDING SITE FOR RESIDUE PTE B 608
8PT1UNKNOWNPTE A:609TUNGSTOPTERIN COFACTOR CONSISTING OF A SINGLE TUNGSTEN CENTER BOUND TO TWO MOLYBDOPTERIN LIGANDS (SUBUNIT A)
9PT2UNKNOWNPTE B:608TUNGSTOPTERIN COFACTOR CONSISTING OF A SINGLE TUNGSTEN CENTER BOUND TO TWO MOLYBDOPTERIN LIGANDS (SUBUNIT B).

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1AOR)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Gly A:309 -Pro A:310
2Tyr A:461 -Pro A:462
3Gly B:309 -Pro B:310
4Tyr B:461 -Pro B:462

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1AOR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1AOR)

(-) Exons   (0, 0)

(no "Exon" information available for 1AOR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:605
 aligned with AOR_PYRFU | Q51739 from UniProtKB/Swiss-Prot  Length:605

    Alignment length:605
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600     
            AOR_PYRFU     1 MYGNWGRFIRVNLSTGDIKVEEYDEELAKKWLGSRGLAIYLLLKEMDPTVDPLSPENKLIIAAGPLTGTSAPTGGRYNVVTKSPLTGFITMANSGGYFGAELKFAGYDAIVVEGKAEKPVYIYIKDEHIEIRDASHIWGKKVSETEATIRKEVGSEKVKIASIGPAGENLVKFAAIMNDGHRAAGRGGVGAVMGSKNLKAIAVEGSKTVPIADKQKFMLVVREKVNKLRNDPVAGGGLPKYGTAVLVNIINENGLYPVKNFQTGVYPYAYEQSGEAMAAKYLVRNKPCYACPIGCGRVNRLPTVGETEGPEYESVWALGANLGINDLASIIEANHMCDELGLDTISTGGTLATAMELYEKGHIKDEELGDAPPFRWGNTEVLHYYIEKIAKREGFGDKLAEGSYRLAESYGHPELSMTVKKLELPAYDPRGAEGHGLGYATNNRGGCHIKNYMISPEILGYPYKMDPHDVSDDKIKMLILFQDLTALIDSAGLCLFTTFGLGADDYRDLLNAALGWDFTTEDYLKIGERIWNAERLFNLKAGLDPARDDTLPKRFLEEPMPEGPNKGHTVRLKEMLPRYYKLRGWTEDGKIPKEKLEELGIAEFY 605
               SCOP domains d1aora2 A:1-210 Aldehyde ferredoxin oxidoreductase                                                                                                                                                                d1aora1 A:211-605 Aldehyde ferredoxin oxidoreductase                                                                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains 1aorA01 A:1-211 Aldehyde Ferredoxin Oxidoreductase, subunit A, domian 1                                                                                                                                            1aorA03 A:212-241,A:428-604   1aorA02 A:242-427 Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2                                                                                                         1aorA03 A:212-241,A:428-604 Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 3                                                                                      - CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeee....eeeeee..hhhhhhh..hhhhhhhhhhhh.............eeeee.............eeeeee......eeeeee...hhhhhhh....eeeee......eeeeee..eeeeee........hhhhhhhhhhhh.....eeee..hhhh.......eee...eee....hhhhhhhh.eeeeeee.........hhhhhhhhhhhhhhhhh.hhhh.hhhhh.hhhhhhhhhh................hhhh.hhhhhhh.eeeee.........eeeeee...eeee...hhhhhhh.hhh....hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh.....hhhh..........hhhhhhhhhhhh...hhhhhhhh.hhhhhhhh..hhh.............hhh.hhhhhhhhh.......hhh..hhhh..............hhhhhhhhhhhhhhhhhhhh...hhhh....hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh...hhhh....hhhhh..............hhhhhhhhhhhh.........hhhhhhh..hhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1aor A   1 MYGNWGRFIRVNLSTGDIKVEEYDEELAKKWLGSRGLAIYLLLKEMDPTVDPLSPENKLIIAAGPLTGTSAPTGGRYNVVTKSPLTGFITMANSGGYFGAELKFAGYDAIVVEGKAEKPVYIYIKDEHIEIRDASHIWGKKVSETEATIRKEVGSEKVKIASIGPAGENLVKFAAIMNDGHRAAGRGGVGAVMGSKNLKAIAVEGSKTVPIADKQKFMLVVREKVNKLRNDPVAGGGLPKYGTAVLVNIINENGLYPVKNFQTGVYPYAYEQSGEAMAAKYLVRNKPCYACPIGCGRVNRLPTVGETEGPEYESVWALGANLGINDLASIIEANHMCDELGLDTISTGGTLATAMELYEKGHIKDEELGDAPPFRWGNTEVLHYYIEKIAKREGFGDKLAEGSYRLAESYGHPELSMTVKKLELPAYDPRGAEGHGLGYATNNRGGCHIKNYMISPEILGYPYKMDPHDVSDDKIKMLILFQDLTALIDSAGLCLFTTFGLGADDYRDLLNAALGWDFTTEDYLKIGERIWNAERLFNLKAGLDPARDDTLPKRFLEEPMPEGPNKGHTVRLKEMLPRYYKLRGWTEDGKIPKEKLEELGIAEFY 605
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600     


Chain B from PDB  Type:PROTEIN  Length:605
 aligned with AOR_PYRFU | Q51739 from UniProtKB/Swiss-Prot  Length:605

    Alignment length:605
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600     
            AOR_PYRFU     1 MYGNWGRFIRVNLSTGDIKVEEYDEELAKKWLGSRGLAIYLLLKEMDPTVDPLSPENKLIIAAGPLTGTSAPTGGRYNVVTKSPLTGFITMANSGGYFGAELKFAGYDAIVVEGKAEKPVYIYIKDEHIEIRDASHIWGKKVSETEATIRKEVGSEKVKIASIGPAGENLVKFAAIMNDGHRAAGRGGVGAVMGSKNLKAIAVEGSKTVPIADKQKFMLVVREKVNKLRNDPVAGGGLPKYGTAVLVNIINENGLYPVKNFQTGVYPYAYEQSGEAMAAKYLVRNKPCYACPIGCGRVNRLPTVGETEGPEYESVWALGANLGINDLASIIEANHMCDELGLDTISTGGTLATAMELYEKGHIKDEELGDAPPFRWGNTEVLHYYIEKIAKREGFGDKLAEGSYRLAESYGHPELSMTVKKLELPAYDPRGAEGHGLGYATNNRGGCHIKNYMISPEILGYPYKMDPHDVSDDKIKMLILFQDLTALIDSAGLCLFTTFGLGADDYRDLLNAALGWDFTTEDYLKIGERIWNAERLFNLKAGLDPARDDTLPKRFLEEPMPEGPNKGHTVRLKEMLPRYYKLRGWTEDGKIPKEKLEELGIAEFY 605
               SCOP domains d1aorb2 B:1-210 Aldehyde ferredoxin oxidoreductase                                                                                                                                                                d1aorb1 B:211-605 Aldehyde ferredoxin oxidoreductase                                                                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains 1aorB01 B:1-211 Aldehyde Ferredoxin Oxidoreductase, subunit A, domian 1                                                                                                                                            1aorB03 B:212-241,B:428-604   1aorB02 B:242-427 Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2                                                                                                         1aorB03 B:212-241,B:428-604 Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 3                                                                                      - CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeee....eeeeee..hhhhhhh..hhhhhhhhhhhh.............eeeee.............eeeeee......eeeeee...hhhhhhhh...eeeee......eeeeee..eeeeee........hhhhhhhhhhh......eeee..hhhh.......eee...eee....hhhhhhhh.eeeeeee.........hhhhhhhhhhhhhhhhh.hhhh.hhhhh.hhhhhhhhhh................hhhh.hhhhhhh.eeeee.........eeeeee...eeee...hhhhhh..hhh....hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh.....hhhh..........hhhhhhhhhhhh...hhhhhhhh.hhhhhhhh..hhh.............hhh.hhhhhhhhh.......hhh..hhhh..............hhhhhhhhhhhhhhhhhhhh...hhhh....hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh...hhhh....hhhhh..............hhhhhhhhhhhh.........hhhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1aor B   1 MYGNWGRFIRVNLSTGDIKVEEYDEELAKKWLGSRGLAIYLLLKEMDPTVDPLSPENKLIIAAGPLTGTSAPTGGRYNVVTKSPLTGFITMANSGGYFGAELKFAGYDAIVVEGKAEKPVYIYIKDEHIEIRDASHIWGKKVSETEATIRKEVGSEKVKIASIGPAGENLVKFAAIMNDGHRAAGRGGVGAVMGSKNLKAIAVEGSKTVPIADKQKFMLVVREKVNKLRNDPVAGGGLPKYGTAVLVNIINENGLYPVKNFQTGVYPYAYEQSGEAMAAKYLVRNKPCYACPIGCGRVNRLPTVGETEGPEYESVWALGANLGINDLASIIEANHMCDELGLDTISTGGTLATAMELYEKGHIKDEELGDAPPFRWGNTEVLHYYIEKIAKREGFGDKLAEGSYRLAESYGHPELSMTVKKLELPAYDPRGAEGHGLGYATNNRGGCHIKNYMISPEILGYPYKMDPHDVSDDKIKMLILFQDLTALIDSAGLCLFTTFGLGADDYRDLLNAALGWDFTTEDYLKIGERIWNAERLFNLKAGLDPARDDTLPKRFLEEPMPEGPNKGHTVRLKEMLPRYYKLRGWTEDGKIPKEKLEELGIAEFY 605
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (3, 6)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1AOR)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (AOR_PYRFU | Q51739)
molecular function
    GO:0051539    4 iron, 4 sulfur cluster binding    Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.
    GO:0033726    aldehyde ferredoxin oxidoreductase activity    Catalysis of the reaction: an aldehyde + H2O + 2 oxidized ferredoxin = an acid + 2 H+ + 2 reduced ferredoxin.
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:0051536    iron-sulfur cluster binding    Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016625    oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces an iron-sulfur protein.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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