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(-) Description

Title :  ADENOVIRUS 5 DBP/URANYL FLUORIDE SOAK
 
Authors :  P. N. Kanellopoulos, D. Tsernoglou, P. C. Van Der Vliet, P. A. Tucker
Date :  14 Mar 96  (Deposition) - 12 Feb 97  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Early Protein, Dna-Binding Protein, Zinc-Finger, Phosphorylation, Nuclear Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. N. Kanellopoulos, D. Tsernoglou, P. C. Van Der Vliet, P. A. Tucker
Conformational Change Of The Adenovirus Dna-Binding Protein Induced By Soaking Crystals With K3Uo2F5 Solutions.
Acta Crystallogr. , Sect. D V. 52 942 1996
PubMed-ID: 15299602  |  Reference-DOI: 10.1107/S0907444996005525
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ADENOVIRUS SINGLE-STRANDED DNA-BINDING PROTEIN
    Chains: A
    Fragment: C-TERMINAL DOMAIN, RESIDUES 174 - 529
    Organism Scientific: HUMAN ADENOVIRUS 5
    Organism Taxid: 28285

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric/Biological Unit (2, 6)
No.NameCountTypeFull Name
1IUM4Ligand/IonURANYL (VI) ION
2ZN2Ligand/IonZINC ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:284 , HIS A:286 , CYS A:339 , CYS A:355BINDING SITE FOR RESIDUE ZN A 530
2AC2SOFTWARECYS A:396 , CYS A:398 , CYS A:450 , CYS A:467BINDING SITE FOR RESIDUE ZN A 531
3AC3SOFTWAREASP A:193 , ASN A:466 , ASP A:468BINDING SITE FOR RESIDUE IUM A 532
4AC4SOFTWAREGLU A:298 , GLN A:330 , ASP A:429 , IUM A:535BINDING SITE FOR RESIDUE IUM A 533
5AC5SOFTWAREASP A:429 , IUM A:535BINDING SITE FOR RESIDUE IUM A 534
6AC6SOFTWAREGLU A:225 , GLU A:298 , IUM A:533 , IUM A:534BINDING SITE FOR RESIDUE IUM A 535

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1ANV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1ANV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1ANV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1ANV)

(-) Exons   (0, 0)

(no "Exon" information available for 1ANV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:314
 aligned with DNB2_ADE05 | P03265 from UniProtKB/Swiss-Prot  Length:529

    Alignment length:351
                                   188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528 
           DNB2_ADE05   179 SAWEKGMEAARALMDKYHVDNDLKANFKLLPDQVEALAAVCKTWLNEEHRGLQLTFTSKKTFVTMMGRFLQAYLQSFAEVTYKHHEPTGCALWLHRCAEIEGELKCLHGSIMINKEHVIEMDVTSENGQRALKEQSSKAKIVKNRWGRNVVQISNTDARCCVHDAACPANQFSGKSCGMFFSEGAKAQVAFKQIKAFMQALYPNAQTGHGHLLMPLRCECNSKPGHAPFLGRQLPKLTPFALSNAEDLDADLISDKSVLASVHHPALIVFQCCNPVYRNSRAQGGGPNCDFKISAPDLLNALVMVRSLWSENFTELPRMVVPEFKWSTKHQYRNVSLPVAHSDARQNPFDF 529
               SCOP domains d1anva1 A:179-265 Domain of early E2A DNA-binding protein, ADDBP                       d1anva2 A:266-385 First Zn-domain                             of early E2A DNA-binding protein, ADDBP                   d1anva3 A:386-529 Second Zn-domain of early E2A DNA-binding protein,          ADDBP                                                              SCOP domains
               CATH domains 1anvA01 A:179-266,A:474-500 Adenovirus Single-stranded Dna-binding Protein, domain 1    1anvA02 A:267-473 Adenovirus Sin                            gle-stranded Dna-binding Protein, domain 2                                                                                                         1anvA01 A:179-266,A:474-500----------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh....hhhhh.........hhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhh...........eeee...................eee.....----------------------------.........eee..................eee..hhhhhhhhhhhhhhhhhh..........eeee.....................eeeee..............hhhhhhhh..eeeee.....---------........eehhhhhhhhhhhhhhhhhh....................................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1anv A 179 SAWEKGMEAARALMDKYHVDNDLKANFKLLPDQVEALAAVCKTWLNEEHRGLQLTFTSNKTFVTMMGRFLQAYLQSFAEVTYKHHEPTGCALWLHRCAEIEGELKCLHGSIMINKEHVIE----------------------------NVVQISNTDARCCVHDAACPANQFSGKSCGMFFSEGAKAQVAFKQIKAFMQALYPNAQTGHGHLLMPLRCECNSKPGHAPFLGRQLPKLTPFALSNAEDLDADLISDKSVLASVHHPALIVFQCCNP---------GGPNCDFKISAPDLLNALVMVRSLWSENFTELPRMVVPEFKWSTKHQYRNVSLPVAHSDARQNPFDF 529
                                   188       198       208       218       228       238       248       258       268       278       288       298         -         -       328       338       348       358       368       378       388       398       408       418       428       438       448    |    -    |  468       478       488       498       508       518       528 
                                                                                                                                                 298                          327                                                                                                                           453       463
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 3)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Small proteins (3458)

(-) CATH Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1ANV)

(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (DNB2_ADE05 | P03265)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0032508    DNA duplex unwinding    The process in which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating a region of unpaired single strands.
    GO:0006260    DNA replication    The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
    GO:0045740    positive regulation of DNA replication    Any process that activates or increases the frequency, rate or extent of DNA replication.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
    GO:0039693    viral DNA genome replication    The replication of a viral DNA genome.
    GO:0039687    viral DNA strand displacement replication    A viral DNA replication process where only one strand is replicated at once, and which releases a single stranded DNA (ssDNA).
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
    GO:0042025    host cell nucleus    A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DNB2_ADE05 | P03265: 1adu 1adv 2waz 2wb0

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