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(-) Description

Title :  THE SOLUTION NMR STRUCTURE OF THE C10R ADDUCT OF BENZO[A]PYRENE-DIOL-EPOXIDE AT THE N6 POSITION OF ADENINE OF AN 11 BASE-PAIR OLIGONUCLEOTIDE SEQUENCE CODING FOR AMINO ACIDS 60-62 OF THE PRODUCT OF THE N-RAS PROTOONCOGENE, MINIMIZED AVERAGE STRUCTURE
 
Authors :  I. S. Zegar, M. P. Stone
Date :  25 Mar 97  (Deposition) - 20 Aug 97  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B
Keywords :  Dna Duplex, Human N-Ras Gene, Codon 61 Sequence, C10R-Bpde Adduct, Intercalation, N6-Adenine Adduct, Deoxyribonucleic Acid (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. S. Zegar, S. J. Kim, T. N. Johansen, P. J. Horton, C. M. Harris, T. M. Harris, M. P. Stone
Adduction Of The Human N-Ras Codon 61 Sequence With (-)-(7S, 8R, 9R, 10S)-7, 8-Dihydroxy-9, 10-Epoxy-7, 8, 9, 10-Tetrahydrobenzo[A] Pyrene: Structural Refinement Of The Intercalated Srsr(61, 2) (-)-(7S, 8R, 9S, 1 0R)-N6-[10-(7, 8, 9, 10- Tetrahydrobenzo[A]Pyrenyl)]-2'-Deoxyadenosyl Adduct From 1H Nmr
Biochemistry V. 35 6212 1996
PubMed-ID: 8639561  |  Reference-DOI: 10.1021/BI9524732
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA (5'-D(*CP*GP*GP*AP*CP*EP*AP*GP*AP*AP*G)-3')
    Chains: A
    Engineered: YES
    Other Details: C10R-BPDE-N6-ADENINE ADDUCT
    Synthetic: YES
 
Molecule 2 - DNA (5'-D(*CP*TP*TP*CP*TP*TP*GP*TP*CP*CP*G)-3')
    Chains: B
    Engineered: YES
    Other Details: C10R-BPDE-N6-ADENINE ADDUCT
    Synthetic: YES

 Structural Features

(-) Chains, Units

  
NMR Structure : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1E1Mod. ResidueN-((-)-(7S,8R,9S,10R)[7,8,9-TRIHYDROXY-7,8,9,10-TETRAHYDROBENZO[A]PYREN-10-YL])-2'-DEOXY-ADENOSINE-5'-MONOPHOSPHATE

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:DNA  Length:11
                                          
                  1agu A  1 CGGACaAGAAG 11
                                 |  10 
                                 6-E   


Chain B from PDB  Type:DNA  Length:11
                                          
                  1agu B 12 CTTCTTGTCCG 22
                                    21
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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  1agu
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