1ADV - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   EARLY E2A DNA-BINDING PROTEIN

Authors :   P. N. Kanellopoulos, D. Tsernoglou, P. C. Van Der Vliet, P. A. Tucker

Date :   12 May 95 (Deposition) - 20 Jun 96 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.20

Chains :   Asym./Biol. Unit : A,B

Keywords :   Dna-Binding Protein, Ssdna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. N. Kanellopoulos, D. Tsernoglou, P. C. Van Der Vliet, P. A. Tucker
Alternative Arrangements Of The Protein Chain Are Possible For The Adenovirus Single-Stranded Dna Binding Protein.
J. Mol. Biol. V. 257 1 1996
PubMed-ID: 8632448 | Reference-DOI: 10.1006/JMBI.1996.0141
(for further references see the PDB file header)

Molecule 1 - ADENOVIRUS SINGLE-STRANDED DNA-BINDING PROTEIN
	Cell	:	INFECTED HELA CELLS
	Chains	:	A, B
	Fragment	:	C-TERMINAL DOMAIN, RESIDUES 174 - 529
	Organism Scientific	:	HUMAN ADENOVIRUS 5
	Organism Taxid	:	28285
	Other Details	:	SECOND CRYSTAL FORM, DATA COLLECTED AT 100 K
	Synonym	:	ADDBP

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 4)

No.	Name	Count	Type	Full Name
1	ZN	4	Ligand/Ion	ZINC ION

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	CYS A:284 , HIS A:286 , CYS A:339 , CYS A:355	BINDING SITE FOR RESIDUE ZN A 530
2	AC2	SOFTWARE	CYS A:396 , CYS A:398 , CYS A:450 , CYS A:467	BINDING SITE FOR RESIDUE ZN A 531
3	AC3	SOFTWARE	CYS B:284 , HIS B:286 , CYS B:339 , CYS B:355	BINDING SITE FOR RESIDUE ZN B 530
4	AC4	SOFTWARE	CYS B:396 , CYS B:398 , CYS B:450 , CYS B:467	BINDING SITE FOR RESIDUE ZN B 531

(no "SS Bond" information available for 1ADV)

(no "Cis Peptide Bond" information available for 1ADV)

(no "SAP(SNP)/Variant" information available for 1ADV)

(no "PROSITE Motif" information available for 1ADV)

(no "Exon" information available for 1ADV)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:287
 aligned with DNB2_ADE05 | P03265 from UniProtKB/Swiss-Prot  Length:529

    Alignment length:350
                                   189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529
           DNB2_ADE05   180 AWEKGMEAARALMDKYHVDNDLKANFKLLPDQVEALAAVCKTWLNEEHRGLQLTFTSKKTFVTMMGRFLQAYLQSFAEVTYKHHEPTGCALWLHRCAEIEGELKCLHGSIMINKEHVIEMDVTSENGQRALKEQSSKAKIVKNRWGRNVVQISNTDARCCVHDAACPANQFSGKSCGMFFSEGAKAQVAFKQIKAFMQALYPNAQTGHGHLLMPLRCECNSKPGHAPFLGRQLPKLTPFALSNAEDLDADLISDKSVLASVHHPALIVFQCCNPVYRNSRAQGGGPNCDFKISAPDLLNALVMVRSLWSENFTELPRMVVPEFKWSTKHQYRNVSLPVAHSDARQNPFDF 529
               SCOP domains d1adva1 A:180-265 Domain of early E2A DNA-binding protein, ADDBP                      d1adva2 A:266-385 First Zn-d                                         omain of early E2A DNA-binding protein, ADDBP      d1adva3 A:386-5     29 Second Zn-domain o      f early E2A DNA-bindi           ng protein, ADDBP                                                 SCOP domains
               CATH domains 1advA01 A:180-266,A:474-500 Adenovirus Single-stranded Dna-binding Protein, domain 1   1advA02 A:267-473 Adenoviru                                         s Single-stranded Dna-binding Protein, domain 2                                                                                            1advA01 A:180-266,A:474-500----------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh....hhhhh.........hhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhh...........eeee...................eee-----------------------------------------.eee..................eee..hhhhhhhhhhhhhhhhhh..........eeee.......-----.........eeeee.......------.hhhhhhhh..eeeee.....-----------......eehhhhhhhhhhhhhhhhhh....................................... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1adv A 180 AWEKGMEAARALMDKYHVDNDLKANFKLLPDQVEALAAVCKTWLNEEHRGLQLTFTSNKTFVTMMGRFLQAYLQSFAEVTYKHHEPTGCALWLHRCAEIEGELKCLHGSIMINK-----------------------------------------DARCCVHDAACPANQFSGKSCGMFFSEGAKAQVAFKQIKAFMQALYPNAQTGHGHLLMPLRCECNS-----PFLGRQLPKLTPFALSNAEDL------DKSVLASVHHPALIVFQCCNP-----------PNCDFKISAPDLLNALVMVRSLWSENFTELPRMVVPEFKWSTKHQYRNVSLPVAHSDARQNPFDF 529
                                   189       199       209       219       229       239       249       259       269       279       289   |     -         -         -         -     | 339       349       359       369       379       389       399|     |409       419      |  -   |   439       449   |     -     | 469       479       489       499       509       519       529
                                                                                                                                           293                                       335                                                              400   406                 426    433                 453         465

Chain B from PDB  Type:PROTEIN  Length:286
 aligned with DNB2_ADE05 | P03265 from UniProtKB/Swiss-Prot  Length:529

    Alignment length:350
                                   189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529
           DNB2_ADE05   180 AWEKGMEAARALMDKYHVDNDLKANFKLLPDQVEALAAVCKTWLNEEHRGLQLTFTSKKTFVTMMGRFLQAYLQSFAEVTYKHHEPTGCALWLHRCAEIEGELKCLHGSIMINKEHVIEMDVTSENGQRALKEQSSKAKIVKNRWGRNVVQISNTDARCCVHDAACPANQFSGKSCGMFFSEGAKAQVAFKQIKAFMQALYPNAQTGHGHLLMPLRCECNSKPGHAPFLGRQLPKLTPFALSNAEDLDADLISDKSVLASVHHPALIVFQCCNPVYRNSRAQGGGPNCDFKISAPDLLNALVMVRSLWSENFTELPRMVVPEFKWSTKHQYRNVSLPVAHSDARQNPFDF 529
               SCOP domains d1advb1 B:180-265 Domain of early E2A DNA-binding protein, ADDBP                      d1advb2 B:266-385 First Zn-                                          domain of       early E2A DNA-binding protein, ADDBd1advb3 B:386-5     29 Second Zn-domain of early E2A DNA-binding pro           tein, ADDBP                                                       SCOP domains
               CATH domains 1advB01 B:180-266,B:474-500 Adenovirus Single-stranded Dna-binding Protein, domain 1   1advB02 B:267-473 Adenovir                                          us Single      -stranded Dna-binding Protein, domain 2                                                                                     1advB01 B:180-266,B:474-500----------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh....hhhhh.........hhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhh...........eeee...................ee------------------------------------------.eee.....------.......eee..hhhhhhhhhhhhhhhhhh..........eeee.......-----.........eeeee..............hhhhhhhh..eeeee.....-----------......eehhhhhhhhhhhhhhhhhh....................................... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1adv B 180 AWEKGMEAARALMDKYHVDNDLKANFKLLPDQVEALAAVCKTWLNEEHRGLQLTFTSNKTFVTMMGRFLQAYLQSFAEVTYKHHEPTGCALWLHRCAEIEGELKCLHGSIMIN------------------------------------------DARCCVHDA------FSGKSCGMFFSEGAKAQVAFKQIKAFMQALYPNAQTGHGHLLMPLRCECNS-----PFLGRQLPKLTPFALSNAEDLDADLISDKSVLASVHHPALIVFQCCNP-----------PNCDFKISAPDLLNALVMVRSLWSENFTELPRMVVPEFKWSTKHQYRNVSLPVAHSDARQNPFDF 529
                                   189       199       209       219       229       239       249       259       269       279       289  |      -         -         -         -     | 339   |     -|      359       369       379       389       399|     |409       419       429       439       449   |     -     | 469       479       489       499       509       519       529
                                                                                                                                          292                                        335     343    350                                               400   406                                            453         465

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "Pfam Domain" information available for 1ADV)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (DNB2_ADE05 | P03265)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0032508	DNA duplex unwinding	The process in which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating a region of unpaired single strands.
	GO:0006260	DNA replication	The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
	GO:0045740	positive regulation of DNA replication	Any process that activates or increases the frequency, rate or extent of DNA replication.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.
	GO:0039693	viral DNA genome replication	The replication of a viral DNA genome.
	GO:0039687	viral DNA strand displacement replication	A viral DNA replication process where only one strand is replicated at once, and which releases a single stranded DNA (ssDNA).
	GO:0016032	viral process	A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
	GO:0042025	host cell nucleus	A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
	GO:0019028	viral capsid	The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.

Asymmetric/Biological Unit
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Description

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Ligands, Modified Residues, Ions (1, 4)

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