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(-) Description

Title :  PEPTIDYLPROLYL ISOMERASE, CYCLOPHILIN-LIKE DOMAIN FROM BRUGIA MALAYI
 
Authors :  V. Mikol, D. Ma, C. K. S. Carlow
Date :  27 Jan 98  (Deposition) - 29 Jul 98  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym./Biol. Unit :  A
Keywords :  Isomerase, Peptidyl-Prolyl Cis-Trans, Peptidylprolyl Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Mikol, D. Ma, C. K. Carlow
Crystal Structure Of The Cyclophilin-Like Domain From The Parasitic Nematode Brugia Malayi.
Protein Sci. V. 7 1310 1998
PubMed-ID: 9655334
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PEPTIDYLPROLYL ISOMERASE
    Atcc: ATCC 75593
    Chains: A
    Collection: ATCC 75593
    EC Number: 5.2.1.8
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Gene: MBP FUSION PROTEIN
    Expression System Plasmid: PMAL-C2
    Expression System Strain: ER2267
    Expression System Taxid: 562
    Expression System Vector Type: DOUBLE STRAND VECTOR (TAC, PMB1 AND AMPR)
    Fragment: CYCLOPHILIN-LIKE DOMAIN
    Gene: BMCYP-1
    Organism Scientific: BRUGIA MALAYI
    Organism Taxid: 6279

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1A33)

(-) Sites  (0, 0)

(no "Site" information available for 1A33)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1A33)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1A33)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1A33)

(-) PROSITE Motifs  (2, 2)

Asymmetric/Biological Unit (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CSA_PPIASE_2PS50072 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.CYP1_BRUMA10-175  1A:10-175
2CSA_PPIASE_1PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.CYP1_BRUMA59-76  1A:59-76

(-) Exons   (0, 0)

(no "Exon" information available for 1A33)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:174
 aligned with CYP1_BRUMA | Q27450 from UniProtKB/Swiss-Prot  Length:843

    Alignment length:174
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173    
           CYP1_BRUMA     4 KDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGELV 177
               SCOP domains d1a33a_ A: Cyclophilin (eukaryotic)                                                                                                                                            SCOP domains
               CATH domains 1a33A00 A:4-177 Cyclophilin                                                                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeeee..eeeeeeeeee.....hhhhhhhhhhhh...................eeeee...eeee................................eeee...........eeee....hhh.....eeeeeee.hhhhhhhh.............eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) ------CSA_PPIASE_2  PDB: A:10-175 UniProt: 10-175                                                                                                                           -- PROSITE (1)
                PROSITE (2) -------------------------------------------------------CSA_PPIASE_1      ----------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1a33 A   4 KDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGELV 177
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1A33)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (CYP1_BRUMA | Q27450)
molecular function
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
    GO:0003755    peptidyl-prolyl cis-trans isomerase activity    Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0).
biological process
    GO:0006457    protein folding    The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
    GO:0000413    protein peptidyl-prolyl isomerization    The modification of a protein by cis-trans isomerization of a proline residue.

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 Related Entries

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        CYP1_BRUMA | Q27450: 1a58 1c5f

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