146D - JenaLib

Title :   SOLUTION STRUCTURE OF THE MITHRAMYCIN DIMER-DNA COMPLEX

Authors :   M. Sastry, D. J. Patel

Date :   09 Nov 93 (Deposition) - 31 Mar 95 (Release) - 09 Jun 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A,B  (2x)

Keywords :   Dna, Nmr, Mithramycin Dimer (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Sastry, D. J. Patel
Solution Structure Of The Mithramycin Dimer-Dna Complex.
Biochemistry V. 32 6588 1993
PubMed-ID: 8329387 | Reference-DOI: 10.1021/BI00077A012
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 13)

NMR Structure (5, 13)

No.	Name	Count	Type	Full Name
1	CRH	2	Ligand/Ion	1,2-HYDRO-1-OXY-3,4-HYDRO-3-(1-METHOXY-2-OXY-3,4-DIHYDROXYPENTYL)-8,9-DIHYROXY-7-METHYLANTHRACENE
2	DDA	6	Ligand/Ion	2,6-DIDEOXY-BETA-D-GLUCOSE
3	DDL	2	Ligand/Ion	2,6-DIDEOXY-BETA-D-GALACTOSE
4	MDA	2	Ligand/Ion	2,6-DIDEOXY-3 C-METHYL-D-RIBOPYRANOSIDE
5	MG	1	Ligand/Ion	MAGNESIUM ION

Sites (13, 13)

NMR Structure (13, 13)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	DDA B:2 , DDA B:4 , MG A:13 , DG B:9 , DC B:10	BINDING SITE FOR RESIDUE CRH B 3
02	AC2	SOFTWARE	DDA A:8 , DDA A:10 , MG A:13 , DG A:3 , DC A:4	BINDING SITE FOR RESIDUE CRH A 9
03	AC3	SOFTWARE	DDA B:2 , DG B:9	BINDING SITE FOR RESIDUE DDA B 1
04	AC4	SOFTWARE	DDA B:1 , CRH B:3 , DDL A:11	BINDING SITE FOR RESIDUE DDA B 2
05	AC5	SOFTWARE	CRH B:3 , DDL B:5 , DG B:11 , DA B:12	BINDING SITE FOR RESIDUE DDA B 4
06	AC6	SOFTWARE	DDA A:7 , CRH A:9	BINDING SITE FOR RESIDUE DDA A 8
07	AC7	SOFTWARE	CRH A:9 , DDL A:11 , DG A:5 , DA A:6	BINDING SITE FOR RESIDUE DDA A 10
08	AC8	SOFTWARE	DDA A:8 , DG A:3	BINDING SITE FOR RESIDUE DDA A 7
09	AC9	SOFTWARE	DDA B:4 , MDA B:6 , DA B:12	BINDING SITE FOR RESIDUE DDL B 5
10	AD1	SOFTWARE	DDA B:2 , DDA A:10 , MDA A:12 , DA A:6	BINDING SITE FOR RESIDUE DDL A 11
11	AD2	SOFTWARE	DDL B:5 , DG B:11 , DA B:12	BINDING SITE FOR RESIDUE MDA B 6
12	AD3	SOFTWARE	DDL A:11 , DG A:5 , DA A:6	BINDING SITE FOR RESIDUE MDA A 12
13	AD4	SOFTWARE	CRH B:3 , CRH A:9	BINDING SITE FOR RESIDUE MG A 13

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

NMR Structure

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Chain A from PDB  Type:DNA  Length:6
                                     
                  146d A  1 TCGCGA  6

Chain B from PDB  Type:DNA  Length:6
                                     
                  146d B  7 TCGCGA 12

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Classification and Annotation

SCOP Domains (0, 0)

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