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5LTJ
Asym. Unit
Info
Asym.Unit (263 KB)
Biol.Unit 1 (257 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE PRP43-ADP-BEF3 COMPLEX (IN ORTHORHOMBIC SPACE GROUP)
Authors
:
M. J. Tauchert, R. Ficner
Date
:
06 Sep 16 (Deposition) - 25 Jan 17 (Release) - 25 Jan 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.78
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Spliceosome, Rna Helicase, Deah-Box Protein, Dhx15, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. J. Tauchert, J. B. Fourmann, R. Luhrmann, R. Ficner
Structural Insights Into The Mechanism Of The Deah-Box Rna Helicase Prp43.
Elife V. 6 2017
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Hetero Components
(7, 16)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
2a: BERYLLIUM TRIFLUORIDE ION (BEFa)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
3d: CHLORIDE ION (CLd)
4a: MAGNESIUM ION (MGa)
5a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
5b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
5c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
5d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
5e: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDe)
5f: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDf)
5g: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDg)
6a: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDa)
7a: SULFATE ION (SO4a)
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No.
Name
Count
Type
Full Name
1
ADP
1
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
BEF
1
Ligand/Ion
BERYLLIUM TRIFLUORIDE ION
3
CL
4
Ligand/Ion
CHLORIDE ION
4
MG
1
Ligand/Ion
MAGNESIUM ION
5
MPD
7
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
6
MRD
1
Ligand/Ion
(4R)-2-METHYLPENTANE-2,4-DIOL
7
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:126 , GLU A:219 , ADP A:801 , BEF A:802 , HOH A:918 , HOH A:961 , HOH A:1051
binding site for residue MG A 803
02
AC2
SOFTWARE
TYR A:445 , GLU A:453 , HOH A:1388
binding site for residue MPD A 804
03
AC3
SOFTWARE
ARG A:152 , GLU A:222 , ASN A:382 , GLU A:385 , THR A:458 , ARG A:464 , SO4 A:812 , HOH A:965 , HOH A:1206
binding site for residue MPD A 805
04
AC4
SOFTWARE
ARG A:625
binding site for residue MPD A 806
05
AC5
SOFTWARE
GLY A:370 , HOH A:939 , HOH A:1059
binding site for residue MPD A 807
06
AC6
SOFTWARE
LYS A:710 , GLN A:711
binding site for residue MPD A 808
07
AC7
SOFTWARE
GLU A:502 , PHE A:661 , MET A:663 , GLN A:664 , LYS A:680 , HOH A:1019
binding site for residue MPD A 809
08
AC8
SOFTWARE
LEU A:518
binding site for residue MPD A 810
09
AC9
SOFTWARE
TYR A:135 , PRO A:139 , HOH A:947
binding site for residue MRD A 811
10
AD1
SOFTWARE
GLN A:404 , LYS A:405 , ARG A:464 , MPD A:805 , HOH A:1025
binding site for residue SO4 A 812
11
AD2
SOFTWARE
ARG A:153 , ARG A:180 , THR A:195 , ARG A:201
binding site for residue CL A 813
12
AD3
SOFTWARE
GLY A:349 , THR A:381
binding site for residue CL A 815
13
AD4
SOFTWARE
ARG A:153 , HOH A:1481
binding site for residue CL A 816
14
AD5
SOFTWARE
GLU A:120 , THR A:121 , GLY A:122 , SER A:123 , GLY A:124 , LYS A:125 , THR A:126 , THR A:127 , ARG A:162 , GLU A:219 , SER A:387 , THR A:389 , ARG A:432 , ARG A:435 , THR A:436 , MG A:803 , HOH A:918 , HOH A:928 , HOH A:961 , HOH A:969 , HOH A:980 , HOH A:1017 , HOH A:1051 , HOH A:1092 , HOH A:1207 , HOH A:1242 , HOH A:1266 , HOH A:1371
binding site for residues ADP A 801 and BEF A 802
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (263 KB)
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