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5L6F
Biol. Unit 1
Info
Asym.Unit (170 KB)
Biol.Unit 1 (163 KB)
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(1)
Title
:
XYLOOLIGOSACCHARIDE OXIDASE FROM MYCELIOPHTHORA THERMOPHILA C1 IN COMPLEX WITH XYLOBIOSE
Authors
:
H. J. Rozeboom, A. R. Ferrari, M. W. Fraaije
Date
:
30 May 16 (Deposition) - 21 Sep 16 (Release) - 16 Nov 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Fad, Cazy, Oligosaccharide, Xylose, Xylan, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
A. R. Ferrari, H. J. Rozeboom, J. M. Dobruchowska, S. S. Van Leeuwen, A. S. Vugts, M. J. Koetsier, J. Visser, M. W. Fraaije
Discovery Of A Xylooligosaccharide Oxidase From Myceliophthora Thermophila C1.
J. Biol. Chem. V. 291 23709 2016
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Hetero Components
(4, 13)
Info
All Hetero Components
1a: 4-O-BETA-D-XYLOPYRANOSYL-BETA-D-XY... (BXPa)
1b: 4-O-BETA-D-XYLOPYRANOSYL-BETA-D-XY... (BXPb)
1c: 4-O-BETA-D-XYLOPYRANOSYL-BETA-D-XY... (BXPc)
1d: 4-O-BETA-D-XYLOPYRANOSYL-BETA-D-XY... (BXPd)
2a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
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No.
Name
Count
Type
Full Name
1
BXP
4
Ligand/Ion
4-O-BETA-D-XYLOPYRANOSYL-BETA-D-XYLOPYRANOSE
2
FAD
1
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
3
NAG
7
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
PEG
1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE A:53 , PRO A:89 , LYS A:90 , SER A:91 , GLY A:92 , GLY A:93 , HIS A:94 , SER A:95 , LEU A:112 , GLY A:153 , THR A:154 , CYS A:155 , VAL A:158 , GLY A:159 , GLY A:161 , GLY A:162 , HIS A:163 , LEU A:165 , HIS A:166 , GLY A:168 , PHE A:169 , GLY A:214 , SER A:215 , GLY A:218 , ILE A:219 , VAL A:220 , TYR A:448 , ASN A:450 , TYR A:451 , BXP A:509 , HOH A:617 , HOH A:647 , HOH A:698 , HOH A:731 , HOH A:751 , HOH A:820
binding site for residue FAD A 501
02
AC2
SOFTWARE
THR A:154 , ARG A:272 , ASP A:355 , TYR A:376 , GLU A:412 , TYR A:451 , FAD A:501 , HOH A:602 , HOH A:617 , HOH A:701 , HOH A:755
binding site for residue BXP A 509
03
AC3
SOFTWARE
ALA A:25 , ASP A:28 , GLU A:29 , ARG A:41 , TRP A:259 , ASN A:262 , GLY A:264 , HOH A:741 , HOH A:744 , HOH A:772 , HOH A:779 , HOH A:910 , HOH A:922
binding site for residue BXP A 510
04
AC4
SOFTWARE
ARG A:56 , PHE A:426 , ASP A:430 , PRO A:454 , GLY A:455 , BXP A:512 , HOH A:621 , HOH A:635 , HOH A:646 , HOH A:655 , HOH A:721 , HOH A:810 , HOH A:869 , HOH A:872 , HOH A:908
binding site for residue BXP A 511
05
AC5
SOFTWARE
LYS A:86 , GLU A:104 , ARG A:458 , GLU A:484 , BXP A:511 , HOH A:603 , HOH A:646 , HOH A:869
binding site for residue BXP A 512
06
AC6
SOFTWARE
GLU A:238 , GLN A:281 , GLN A:283 , HIS A:322 , TYR A:325 , ARG A:359 , HOH A:657
binding site for residue PEG A 513
07
AC7
SOFTWARE
LYS A:35 , ARG A:114 , ASN A:117 , GLN A:130 , HOH A:678 , HOH A:792 , HOH A:887
binding site for Poly-Saccharide residues NAG A 502 through NAG A 503 bound to ASN A 117
08
AC8
SOFTWARE
ASN A:192 , SER A:194 , THR A:201 , GLU A:202 , ASN A:203 , GLN A:479 , HOH A:633 , HOH A:639 , HOH A:759 , HOH A:860 , HOH A:894
binding site for Poly-Saccharide residues NAG A 504 through NAG A 505 bound to ASN A 192
09
AC9
SOFTWARE
PRO A:232 , ASN A:233 , GLU A:313
binding site for Mono-Saccharide NAG A 506 bound to ASN A 233
10
AD1
SOFTWARE
ASN A:245 , SER A:247 , ASN A:248 , HOH A:604
binding site for Mono-Saccharide NAG A 507 bound to ASN A 245
11
AD2
SOFTWARE
ASN A:289 , HOH A:605 , HOH A:819
binding site for Mono-Saccharide NAG A 508 bound to ASN A 289
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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SCOP Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (170 KB)
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