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5KKZ
Asym. Unit
Info
Asym.Unit (1.7 MB)
Biol.Unit 1 (866 KB)
Biol.Unit 2 (868 KB)
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(1)
Title
:
RHODOBACTER SPHAEROIDES BC1 WITH FAMOXADONE
Authors
:
D. Xia, L. Esser, F. Zhou, W. K. Tang, C. A. Yu
Date
:
23 Jun 16 (Deposition) - 12 Oct 16 (Release) - 07 Dec 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.97
Chains
:
Asym. Unit : A,B,C,E,F,G,K,L,M,O,P,Q
Biol. Unit 1: A,B,C,E,F,G (1x)
Biol. Unit 2: K,L,M,O,P,Q (1x)
Keywords
:
Mitochondrial Respiratory Chain Complex, Cytochrome Bc1, Inhibitors, Electron Transfer, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Esser, F. Zhou, Y. Zhou, Y. Xiao, W. K. Tang, C. A. Yu, Z. Qin, D. Xia
Hydrogen Bonding To The Substrate Is Not Required For Riesk Iron-Sulfur Protein Docking To The Quinol Oxidation Site Of Complex Iii.
J. Biol. Chem. V. 291 25019 2016
[
close entry info
]
Hetero Components
(8, 38)
Info
All Hetero Components
1a: ASCORBIC ACID (ASCa)
1b: ASCORBIC ACID (ASCb)
1c: ASCORBIC ACID (ASCc)
1d: ASCORBIC ACID (ASCd)
2a: B-OCTYLGLUCOSIDE (BOGa)
2b: B-OCTYLGLUCOSIDE (BOGb)
2c: B-OCTYLGLUCOSIDE (BOGc)
2d: B-OCTYLGLUCOSIDE (BOGd)
3a: FE2/S2 (INORGANIC) CLUSTER (FESa)
3b: FE2/S2 (INORGANIC) CLUSTER (FESb)
3c: FE2/S2 (INORGANIC) CLUSTER (FESc)
3d: FE2/S2 (INORGANIC) CLUSTER (FESd)
4a: FAMOXADONE (FMXa)
4b: FAMOXADONE (FMXb)
4c: FAMOXADONE (FMXc)
4d: FAMOXADONE (FMXd)
5a: HEME C (HECa)
5b: HEME C (HECb)
5c: HEME C (HECc)
5d: HEME C (HECd)
6a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
6b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
6c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
6d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
6e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
6f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
6g: PROTOPORPHYRIN IX CONTAINING FE (HEMg)
6h: PROTOPORPHYRIN IX CONTAINING FE (HEMh)
7a: (1R)-2-{[(R)-(2-AMINOETHOXY)(HYDRO... (LOPa)
7b: (1R)-2-{[(R)-(2-AMINOETHOXY)(HYDRO... (LOPb)
7c: (1R)-2-{[(R)-(2-AMINOETHOXY)(HYDRO... (LOPc)
7d: (1R)-2-{[(R)-(2-AMINOETHOXY)(HYDRO... (LOPd)
8a: STRONTIUM ION (SRa)
8b: STRONTIUM ION (SRb)
8c: STRONTIUM ION (SRc)
8d: STRONTIUM ION (SRd)
8e: STRONTIUM ION (SRe)
8f: STRONTIUM ION (SRf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ASC
4
Ligand/Ion
ASCORBIC ACID
2
BOG
4
Ligand/Ion
B-OCTYLGLUCOSIDE
3
FES
4
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
4
FMX
4
Ligand/Ion
FAMOXADONE
5
HEC
4
Ligand/Ion
HEME C
6
HEM
8
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
7
LOP
4
Ligand/Ion
(1R)-2-{[(R)-(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(DODECANOYLOXY)METHYL]ETHYL (9Z)-OCTADEC-9-ENOATE
8
SR
6
Ligand/Ion
STRONTIUM ION
[
close Hetero Component info
]
Sites
(39, 39)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
37: AG1 (SOFTWARE)
38: AG2 (SOFTWARE)
39: AG3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:55 , GLN A:58 , GLY A:62 , ILE A:63 , LEU A:65 , ALA A:66 , ARG A:94 , HIS A:97 , ALA A:98 , THR A:142 , GLY A:146 , LEU A:149 , PRO A:150 , HIS A:198 , TYR A:199 , PRO A:202
binding site for residue HEM A 1001
02
AC2
SOFTWARE
TRP A:45 , GLY A:48 , LEU A:51 , PHE A:104 , HIS A:111 , ILE A:112 , ARG A:114 , SER A:120 , ARG A:125 , THR A:128 , GLY A:132 , MET A:133 , ILE A:135 , HIS A:212 , PHE A:216 , GLY A:220 , ASN A:221 , ASN A:222
binding site for residue HEM A 1002
03
AC3
SOFTWARE
MET A:140 , PHE A:144 , TYR A:147 , MET A:154 , GLY A:158 , ILE A:162 , VAL A:293 , PRO A:294 , GLU A:295 , PHE A:298
binding site for residue FMX A 1003
04
AC4
SOFTWARE
HIS A:291 , ILE A:292 , TYR A:302 , ARG A:306 , ALA A:382 , GLN A:383 , GLN A:384 , PRO G:150 , CYS G:151 , HIS G:152
binding site for residue ASC A 1004
05
AC5
SOFTWARE
MET A:44 , LEU A:103 , ILE A:106 , LEU A:110 , TYR A:117 , TYR A:118 , ARG A:358 , TRP A:368
binding site for residue LOP A 1006
06
AC6
SOFTWARE
VAL B:35 , CYS B:36 , CYS B:39 , HIS B:40 , ASN B:96 , PRO B:98 , MET B:103 , ARG B:107 , TYR B:130 , PHE B:160 , ILE B:183 , ALA B:184 , MET B:185
binding site for residue HEC B 1001
07
AC7
SOFTWARE
ASP B:8 , VAL B:9 , GLU B:14 , GLU B:129
binding site for residue SR B 1002
08
AC8
SOFTWARE
PHE A:269 , GLU B:14 , GLY B:15 , LEU B:121 , PHE B:122 , GLY B:124 , LYS B:227
binding site for residue BOG B 1003
09
AC9
SOFTWARE
CYS C:129 , HIS C:131 , LEU C:132 , CYS C:149 , CYS C:151 , HIS C:152
binding site for residue FES C 1001
10
AD1
SOFTWARE
GLN E:58 , GLY E:62 , ILE E:63 , LEU E:65 , ARG E:94 , HIS E:97 , PHE E:104 , THR E:142 , GLY E:146 , TYR E:147 , LEU E:149 , PRO E:150 , HIS E:198 , TYR E:199 , PRO E:202
binding site for residue HEM E 1001
11
AD2
SOFTWARE
TRP E:45 , GLY E:48 , LEU E:51 , ALA E:52 , PHE E:104 , HIS E:111 , ILE E:112 , ARG E:114 , SER E:120 , ARG E:125 , GLY E:132 , MET E:133 , ILE E:135 , VAL E:209 , HIS E:212 , PHE E:216 , GLY E:220 , ASN E:222
binding site for residue HEM E 1002
12
AD3
SOFTWARE
MET E:140 , PHE E:144 , TYR E:147 , MET E:154 , GLY E:158 , VAL E:161 , ILE E:162 , VAL E:293 , PRO E:294 , GLU E:295 , PHE E:298
binding site for residue FMX E 1003
13
AD4
SOFTWARE
PRO C:150 , CYS C:151 , HIS C:152 , ALA E:290 , HIS E:291 , ILE E:292 , TYR E:302 , ARG E:306 , ALA E:382 , GLN E:383 , GLN E:384
binding site for residue ASC E 1004
14
AD5
SOFTWARE
ASN E:42 , MET E:44 , LEU E:110 , TYR E:117 , TYR E:118 , VAL E:262 , ARG E:358 , TRP E:368
binding site for residue LOP E 1005
15
AD6
SOFTWARE
ASP F:8 , VAL F:9 , GLU F:14 , GLU F:129
binding site for residue SR F 1002
16
AD7
SOFTWARE
PHE E:269 , GLU F:14 , GLY F:15 , LEU F:121 , PHE F:122 , GLY F:124 , LYS F:227
binding site for residue BOG F 1003
17
AD8
SOFTWARE
CYS G:129 , HIS G:131 , LEU G:132 , CYS G:134 , CYS G:149 , CYS G:151 , HIS G:152 , SER G:154
binding site for residue FES G 1001
18
AD9
SOFTWARE
LEU K:55 , GLN K:58 , GLY K:62 , ILE K:63 , LEU K:65 , ALA K:66 , ARG K:94 , HIS K:97 , THR K:142 , GLY K:146 , TYR K:147 , LEU K:149 , PRO K:150 , HIS K:198 , TYR K:199 , PRO K:202
binding site for residue HEM K 1001
19
AE1
SOFTWARE
TRP K:45 , GLY K:48 , LEU K:51 , ALA K:52 , PHE K:104 , HIS K:111 , ARG K:114 , SER K:120 , ARG K:125 , GLY K:132 , MET K:133 , ILE K:135 , HIS K:212 , PHE K:216 , GLY K:220 , ASN K:222
binding site for residue HEM K 1002
20
AE2
SOFTWARE
MET K:140 , PHE K:144 , TYR K:147 , MET K:154 , ILE K:162 , VAL K:293 , PRO K:294 , GLU K:295 , PHE K:298 , HOH K:1101
binding site for residue FMX K 1003
21
AE3
SOFTWARE
ALA K:290 , HIS K:291 , ILE K:292 , TYR K:302 , ARG K:306 , ALA K:382 , GLN K:383 , GLN K:384 , CYS Q:151 , HIS Q:152
binding site for residue ASC K 1004
22
AE4
SOFTWARE
ASN K:42 , MET K:44 , PHE K:113 , TYR K:117 , TYR K:118 , ARG K:358 , PHE K:367 , ALA K:371
binding site for residue LOP K 1006
23
AE5
SOFTWARE
ALA K:265 , PHE K:269 , GLU L:14 , GLY L:15 , PHE L:122 , GLY L:124 , LYS L:227
binding site for residue BOG K 1007
24
AE6
SOFTWARE
ASP L:8 , VAL L:9 , GLU L:14 , GLU L:129
binding site for residue SR L 1002
25
AE7
SOFTWARE
CYS M:129 , HIS M:131 , LEU M:132 , CYS M:149 , CYS M:151 , HIS M:152 , SER M:154
binding site for residue FES M 1001
26
AE8
SOFTWARE
LEU O:55 , GLN O:58 , GLY O:62 , ILE O:63 , LEU O:65 , ALA O:66 , ARG O:94 , HIS O:97 , ALA O:98 , THR O:142 , GLY O:146 , LEU O:149 , PRO O:150 , HIS O:198 , TYR O:199 , PRO O:202
binding site for residue HEM O 1001
27
AE9
SOFTWARE
TRP O:45 , GLY O:48 , LEU O:51 , PHE O:104 , HIS O:111 , ARG O:114 , SER O:120 , ARG O:125 , GLY O:132 , MET O:133 , ILE O:135 , VAL O:209 , HIS O:212 , PHE O:216 , GLY O:220 , ASN O:221 , ASN O:222
binding site for residue HEM O 1002
28
AF1
SOFTWARE
MET O:140 , PHE O:144 , TYR O:147 , MET O:154 , GLY O:158 , ILE O:162 , VAL O:293 , PRO O:294 , GLU O:295 , PHE O:298 , HOH O:1101
binding site for residue FMX O 1003
29
AF2
SOFTWARE
PRO M:150 , CYS M:151 , HIS M:152 , ALA O:290 , HIS O:291 , ILE O:292 , VAL O:293 , TYR O:302 , ARG O:306 , ALA O:382 , GLN O:383 , GLN O:384
binding site for residue ASC O 1004
30
AF3
SOFTWARE
MET O:44 , LEU O:103 , ARG O:114 , TYR O:117 , TYR O:118 , VAL O:262 , LEU O:274 , ARG O:358
binding site for residue LOP O 1005
31
AF4
SOFTWARE
ASP P:8 , VAL P:9 , GLU P:14 , GLU P:129
binding site for residue SR P 1002
32
AF5
SOFTWARE
PHE O:269 , GLU P:14 , GLY P:15 , LEU P:121 , PHE P:122 , GLY P:124 , LYS P:227
binding site for residue BOG P 1003
33
AF6
SOFTWARE
CYS Q:129 , HIS Q:131 , LEU Q:132 , CYS Q:149 , CYS Q:151 , HIS Q:152 , SER Q:154
binding site for residue FES Q 1001
34
AF7
SOFTWARE
VAL F:31 , TYR F:32 , VAL F:35 , ALA F:37 , ALA F:38 , CYS F:39 , HIS F:40 , ASN F:96 , PRO F:98 , MET F:103 , ARG F:107 , TYR F:130 , LEU F:135 , PHE F:160 , ILE F:183 , ALA F:184 , MET F:185
binding site for Di-peptide HEC F 1001 and CYS F 36
35
AF8
SOFTWARE
VAL F:35 , CYS F:36 , ALA F:37 , ALA F:38 , HIS F:40 , SER F:92 , ALA F:93 , LEU F:94 , ASN F:96 , ALA F:97 , PRO F:98 , MET F:103 , ARG F:107 , TYR F:130 , LEU F:135 , PHE F:160 , ILE F:183 , ALA F:184 , MET F:185
binding site for Di-peptide HEC F 1001 and CYS F 39
36
AF9
SOFTWARE
VAL L:35 , CYS L:36 , ALA L:37 , ALA L:38 , HIS L:40 , SER L:92 , ALA L:93 , LEU L:94 , ASN L:96 , ALA L:97 , PRO L:98 , MET L:103 , ARG L:107 , TYR L:130 , LEU L:135 , PHE L:160 , ILE L:183 , ALA L:184 , MET L:185 , PRO L:188
binding site for Di-peptide HEC L 1001 and CYS L 39
37
AG1
SOFTWARE
VAL L:31 , TYR L:32 , VAL L:35 , ALA L:37 , ALA L:38 , CYS L:39 , HIS L:40 , LEU L:94 , ASN L:96 , PRO L:98 , MET L:103 , ARG L:107 , TYR L:130 , LEU L:135 , PHE L:160 , ILE L:183 , ALA L:184 , MET L:185 , PRO L:188
binding site for Di-peptide HEC L 1001 and CYS L 36
38
AG2
SOFTWARE
VAL P:35 , CYS P:36 , ALA P:37 , ALA P:38 , HIS P:40 , SER P:92 , ALA P:93 , LEU P:94 , ASN P:96 , ALA P:97 , PRO P:98 , MET P:103 , ARG P:107 , TYR P:130 , LEU P:135 , PHE P:160 , ILE P:183 , ALA P:184 , MET P:185
binding site for Di-peptide HEC P 1001 and CYS P 39
39
AG3
SOFTWARE
VAL P:31 , TYR P:32 , VAL P:35 , ALA P:37 , ALA P:38 , CYS P:39 , HIS P:40 , ASN P:96 , PRO P:98 , MET P:103 , ARG P:107 , TYR P:130 , LEU P:135 , PHE P:160 , ILE P:183 , ALA P:184 , MET P:185
binding site for Di-peptide HEC P 1001 and CYS P 36
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Asym.Unit (1.7 MB)
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