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5K77
Biol. Unit 4
Info
Asym.Unit (644 KB)
Biol.Unit 1 (132 KB)
Biol.Unit 2 (134 KB)
Biol.Unit 3 (134 KB)
Biol.Unit 4 (133 KB)
Biol.Unit 5 (134 KB)
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(1)
Title
:
DBR1 IN COMPLEX WITH 7-MER BRANCHED RNA
Authors
:
N. E. Clark, A. B. Taylor, P. J. Hart
Date
:
25 May 16 (Deposition) - 07 Dec 16 (Release) - 07 Dec 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.17
Chains
:
Asym. Unit : A,B,C,D,E,V,W,X,Y,Z,v,w,x,y,z
Biol. Unit 1: A,V,v (1x)
Biol. Unit 2: B,W,w (1x)
Biol. Unit 3: C,X,x (1x)
Biol. Unit 4: D,Y,y (1x)
Biol. Unit 5: E,Z,z (1x)
Keywords
:
Metalloenzyme, Complex, Branched Rna, Hydrolase-Rna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. E. Clark, A. Katolik, K. Roberts, A. B. Taylor, S. P. Holloway, J. P. Schuermann, E. J. Montemayor, S. W. Stevens, P. F. Fitzpatrick, M. J. Damha, P. J. Hart
The Rna Lariat Debranching Enzyme Dbr1: Metal Dependence An Branched Rna Co-Crystal Structures
Proc. Natl. Acad. Sci. Usa 2016
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: FE (II) ION (FE2a)
1b: FE (II) ION (FE2b)
1c: FE (II) ION (FE2c)
1d: FE (II) ION (FE2d)
1e: FE (II) ION (FE2e)
2a: HYDROXIDE ION (OHa)
2b: HYDROXIDE ION (OHb)
2c: HYDROXIDE ION (OHc)
2d: HYDROXIDE ION (OHd)
2e: HYDROXIDE ION (OHe)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
3p: SULFATE ION (SO4p)
3q: SULFATE ION (SO4q)
3r: SULFATE ION (SO4r)
3s: SULFATE ION (SO4s)
3t: SULFATE ION (SO4t)
3u: SULFATE ION (SO4u)
3v: SULFATE ION (SO4v)
3w: SULFATE ION (SO4w)
3x: SULFATE ION (SO4x)
3y: SULFATE ION (SO4y)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
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Label:
No.
Name
Count
Type
Full Name
1
FE2
1
Ligand/Ion
FE (II) ION
2
OH
-1
Ligand/Ion
HYDROXIDE ION
3
SO4
5
Ligand/Ion
SULFATE ION
4
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(11, 11)
Info
All Sites
01: AC6 (SOFTWARE)
02: AE1 (SOFTWARE)
03: AE8 (SOFTWARE)
04: AE9 (SOFTWARE)
05: AF1 (SOFTWARE)
06: AF2 (SOFTWARE)
07: AF3 (SOFTWARE)
08: AF4 (SOFTWARE)
09: AF5 (SOFTWARE)
10: AF6 (SOFTWARE)
11: AG8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC6
SOFTWARE
TYR A:74 , HOH A:547 , LYS D:320 , TYR D:321
binding site for residue SO4 A 406
02
AE1
SOFTWARE
LYS C:320 , TYR C:321 , HOH C:503 , HOH C:515 , TYR D:51 , TYR D:74 , THR D:332
binding site for residue SO4 C 404
03
AE8
SOFTWARE
ASP D:45 , ASN D:90 , HIS D:180 , HIS D:230 , ZN D:402 , OH D:408 , G y:510
binding site for residue FE2 D 401
04
AE9
SOFTWARE
CYS D:14 , HIS D:16 , ASP D:45 , HIS D:232 , FE2 D:401 , OH D:408 , G y:510
binding site for residue ZN D 402
05
AF1
SOFTWARE
ARG D:50 , ASN D:95 , HIS D:99 , PRO D:146 , HOH D:517 , HOH D:533 , HOH D:550
binding site for residue SO4 D 403
06
AF2
SOFTWARE
SER D:172 , GLN D:173
binding site for residue SO4 D 404
07
AF3
SOFTWARE
GLN D:163 , SER D:298 , ILE D:299 , SER D:300 , HOH D:590
binding site for residue SO4 D 405
08
AF4
SOFTWARE
GLY D:68 , HIS D:71 , LEU D:72 , HOH D:599
binding site for residue SO4 D 406
09
AF5
SOFTWARE
LYS D:18 , TYR D:64 , LYS D:249 , TYR D:252 , A Y:501
binding site for residue SO4 D 407
10
AF6
SOFTWARE
CYS D:14 , ASP D:45 , HIS D:180 , HIS D:230 , HIS D:232 , FE2 D:401 , ZN D:402 , G y:510
binding site for residue OH D 408
11
AG8
SOFTWARE
HIS D:16 , ASP D:45 , GLN D:47 , VAL D:60 , PRO D:61 , TYR D:64 , ASN D:90 , GLY D:201 , PHE D:202 , ASP D:205 , LEU D:209 , HIS D:230 , MET D:231 , HIS D:232 , LYS D:249 , FE2 D:401 , ZN D:402 , SO4 D:407 , OH D:408 , HOH D:523 , U y:511 , A Y:500 , C Y:502
binding site for Di-nucleotide G J 510 and A Y 501
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (644 KB)
Header - Asym.Unit
Biol.Unit 1 (132 KB)
Header - Biol.Unit 1
Biol.Unit 2 (134 KB)
Header - Biol.Unit 2
Biol.Unit 3 (134 KB)
Header - Biol.Unit 3
Biol.Unit 4 (133 KB)
Header - Biol.Unit 4
Biol.Unit 5 (134 KB)
Header - Biol.Unit 5
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