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5K77
Biol. Unit 2
Info
Asym.Unit (644 KB)
Biol.Unit 1 (132 KB)
Biol.Unit 2 (134 KB)
Biol.Unit 3 (134 KB)
Biol.Unit 4 (133 KB)
Biol.Unit 5 (134 KB)
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(1)
Title
:
DBR1 IN COMPLEX WITH 7-MER BRANCHED RNA
Authors
:
N. E. Clark, A. B. Taylor, P. J. Hart
Date
:
25 May 16 (Deposition) - 07 Dec 16 (Release) - 07 Dec 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.17
Chains
:
Asym. Unit : A,B,C,D,E,V,W,X,Y,Z,v,w,x,y,z
Biol. Unit 1: A,V,v (1x)
Biol. Unit 2: B,W,w (1x)
Biol. Unit 3: C,X,x (1x)
Biol. Unit 4: D,Y,y (1x)
Biol. Unit 5: E,Z,z (1x)
Keywords
:
Metalloenzyme, Complex, Branched Rna, Hydrolase-Rna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. E. Clark, A. Katolik, K. Roberts, A. B. Taylor, S. P. Holloway, J. P. Schuermann, E. J. Montemayor, S. W. Stevens, P. F. Fitzpatrick, M. J. Damha, P. J. Hart
The Rna Lariat Debranching Enzyme Dbr1: Metal Dependence An Branched Rna Co-Crystal Structures
Proc. Natl. Acad. Sci. Usa 2016
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: FE (II) ION (FE2a)
1b: FE (II) ION (FE2b)
1c: FE (II) ION (FE2c)
1d: FE (II) ION (FE2d)
1e: FE (II) ION (FE2e)
2a: HYDROXIDE ION (OHa)
2b: HYDROXIDE ION (OHb)
2c: HYDROXIDE ION (OHc)
2d: HYDROXIDE ION (OHd)
2e: HYDROXIDE ION (OHe)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
3p: SULFATE ION (SO4p)
3q: SULFATE ION (SO4q)
3r: SULFATE ION (SO4r)
3s: SULFATE ION (SO4s)
3t: SULFATE ION (SO4t)
3u: SULFATE ION (SO4u)
3v: SULFATE ION (SO4v)
3w: SULFATE ION (SO4w)
3x: SULFATE ION (SO4x)
3y: SULFATE ION (SO4y)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
View:
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Label:
No.
Name
Count
Type
Full Name
1
FE2
1
Ligand/Ion
FE (II) ION
2
OH
-1
Ligand/Ion
HYDROXIDE ION
3
SO4
4
Ligand/Ion
SULFATE ION
4
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(10, 10)
Info
All Sites
01: AC5 (SOFTWARE)
02: AC9 (SOFTWARE)
03: AD1 (SOFTWARE)
04: AD2 (SOFTWARE)
05: AD3 (SOFTWARE)
06: AD4 (SOFTWARE)
07: AD5 (SOFTWARE)
08: AD6 (SOFTWARE)
09: AG3 (SOFTWARE)
10: AG6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC5
SOFTWARE
LYS A:320 , TYR A:321 , TYR B:74
binding site for residue SO4 A 405
02
AC9
SOFTWARE
ASP B:45 , ASN B:90 , HIS B:180 , HIS B:230 , ZN B:402 , OH B:407 , G w:510
binding site for residue FE2 B 401
03
AD1
SOFTWARE
CYS B:14 , HIS B:16 , ASP B:45 , HIS B:232 , FE2 B:401 , OH B:407 , G w:510
binding site for residue ZN B 402
04
AD2
SOFTWARE
ARG B:50 , ASN B:95 , HIS B:99 , PRO B:146 , HOH B:513 , HOH B:559
binding site for residue SO4 B 403
05
AD3
SOFTWARE
LYS B:18 , LYS B:249 , A W:501
binding site for residue SO4 B 404
06
AD4
SOFTWARE
GLN B:184 , GLY B:185 , LYS B:215 , HOH B:510 , HOH B:557 , THR C:307 , LYS C:308
binding site for residue SO4 B 405
07
AD5
SOFTWARE
THR B:307 , LYS B:308 , LYS C:215 , HOH C:546
binding site for residue SO4 B 406
08
AD6
SOFTWARE
CYS B:14 , ASP B:45 , HIS B:180 , HIS B:230 , HIS B:232 , FE2 B:401 , ZN B:402 , G w:510
binding site for residue OH B 407
09
AG3
SOFTWARE
LYS B:320 , TYR B:321 , TYR E:51 , TYR E:74 , HOH E:570
binding site for residue SO4 E 406
10
AG6
SOFTWARE
HIS B:16 , ASP B:45 , GLN B:47 , PRO B:61 , LYS B:63 , TYR B:64 , ASN B:90 , GLY B:201 , ASP B:205 , LEU B:209 , HIS B:230 , MET B:231 , HIS B:232 , LYS B:249 , FE2 B:401 , ZN B:402 , SO4 B:404 , OH B:407 , HOH B:549 , U w:511 , A W:500 , C W:502
binding site for Di-nucleotide G H 510 and A W 501
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (644 KB)
Header - Asym.Unit
Biol.Unit 1 (132 KB)
Header - Biol.Unit 1
Biol.Unit 2 (134 KB)
Header - Biol.Unit 2
Biol.Unit 3 (134 KB)
Header - Biol.Unit 3
Biol.Unit 4 (133 KB)
Header - Biol.Unit 4
Biol.Unit 5 (134 KB)
Header - Biol.Unit 5
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