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5K77
Asym. Unit
Info
Asym.Unit (644 KB)
Biol.Unit 1 (132 KB)
Biol.Unit 2 (134 KB)
Biol.Unit 3 (134 KB)
Biol.Unit 4 (133 KB)
Biol.Unit 5 (134 KB)
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(1)
Title
:
DBR1 IN COMPLEX WITH 7-MER BRANCHED RNA
Authors
:
N. E. Clark, A. B. Taylor, P. J. Hart
Date
:
25 May 16 (Deposition) - 07 Dec 16 (Release) - 07 Dec 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.17
Chains
:
Asym. Unit : A,B,C,D,E,V,W,X,Y,Z,v,w,x,y,z
Biol. Unit 1: A,V,v (1x)
Biol. Unit 2: B,W,w (1x)
Biol. Unit 3: C,X,x (1x)
Biol. Unit 4: D,Y,y (1x)
Biol. Unit 5: E,Z,z (1x)
Keywords
:
Metalloenzyme, Complex, Branched Rna, Hydrolase-Rna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. E. Clark, A. Katolik, K. Roberts, A. B. Taylor, S. P. Holloway, J. P. Schuermann, E. J. Montemayor, S. W. Stevens, P. F. Fitzpatrick, M. J. Damha, P. J. Hart
The Rna Lariat Debranching Enzyme Dbr1: Metal Dependence An Branched Rna Co-Crystal Structures
Proc. Natl. Acad. Sci. Usa 2016
[
close entry info
]
Hetero Components
(4, 40)
Info
All Hetero Components
1a: FE (II) ION (FE2a)
1b: FE (II) ION (FE2b)
1c: FE (II) ION (FE2c)
1d: FE (II) ION (FE2d)
1e: FE (II) ION (FE2e)
2a: HYDROXIDE ION (OHa)
2b: HYDROXIDE ION (OHb)
2c: HYDROXIDE ION (OHc)
2d: HYDROXIDE ION (OHd)
2e: HYDROXIDE ION (OHe)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
3p: SULFATE ION (SO4p)
3q: SULFATE ION (SO4q)
3r: SULFATE ION (SO4r)
3s: SULFATE ION (SO4s)
3t: SULFATE ION (SO4t)
3u: SULFATE ION (SO4u)
3v: SULFATE ION (SO4v)
3w: SULFATE ION (SO4w)
3x: SULFATE ION (SO4x)
3y: SULFATE ION (SO4y)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FE2
5
Ligand/Ion
FE (II) ION
2
OH
5
Ligand/Ion
HYDROXIDE ION
3
SO4
25
Ligand/Ion
SULFATE ION
4
ZN
5
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(45, 45)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
37: AG1 (SOFTWARE)
38: AG2 (SOFTWARE)
39: AG3 (SOFTWARE)
40: AG4 (SOFTWARE)
41: AG5 (SOFTWARE)
42: AG6 (SOFTWARE)
43: AG7 (SOFTWARE)
44: AG8 (SOFTWARE)
45: AG9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:14 , HIS A:16 , ASP A:45 , HIS A:232 , FE2 A:402 , OH A:408 , G v:510
binding site for residue ZN A 401
02
AC2
SOFTWARE
ASP A:45 , ASN A:90 , HIS A:180 , HIS A:230 , ZN A:401 , OH A:408 , G v:510
binding site for residue FE2 A 402
03
AC3
SOFTWARE
ARG A:50 , ASN A:95 , HIS A:99 , PRO A:146
binding site for residue SO4 A 403
04
AC4
SOFTWARE
LYS A:18 , TYR A:64 , LYS A:249 , TYR A:252 , A V:501
binding site for residue SO4 A 404
05
AC5
SOFTWARE
LYS A:320 , TYR A:321 , TYR B:74
binding site for residue SO4 A 405
06
AC6
SOFTWARE
TYR A:74 , HOH A:547 , LYS D:320 , TYR D:321
binding site for residue SO4 A 406
07
AC7
SOFTWARE
LYS A:289 , THR A:338
binding site for residue SO4 A 407
08
AC8
SOFTWARE
CYS A:14 , ASP A:45 , HIS A:180 , HIS A:230 , HIS A:232 , ZN A:401 , FE2 A:402 , G v:510
binding site for residue OH A 408
09
AC9
SOFTWARE
ASP B:45 , ASN B:90 , HIS B:180 , HIS B:230 , ZN B:402 , OH B:407 , G w:510
binding site for residue FE2 B 401
10
AD1
SOFTWARE
CYS B:14 , HIS B:16 , ASP B:45 , HIS B:232 , FE2 B:401 , OH B:407 , G w:510
binding site for residue ZN B 402
11
AD2
SOFTWARE
ARG B:50 , ASN B:95 , HIS B:99 , PRO B:146 , HOH B:513 , HOH B:559
binding site for residue SO4 B 403
12
AD3
SOFTWARE
LYS B:18 , LYS B:249 , A W:501
binding site for residue SO4 B 404
13
AD4
SOFTWARE
GLN B:184 , GLY B:185 , LYS B:215 , HOH B:510 , HOH B:557 , THR C:307 , LYS C:308
binding site for residue SO4 B 405
14
AD5
SOFTWARE
THR B:307 , LYS B:308 , LYS C:215 , HOH C:546
binding site for residue SO4 B 406
15
AD6
SOFTWARE
CYS B:14 , ASP B:45 , HIS B:180 , HIS B:230 , HIS B:232 , FE2 B:401 , ZN B:402 , G w:510
binding site for residue OH B 407
16
AD7
SOFTWARE
CYS C:14 , HIS C:16 , ASP C:45 , HIS C:232 , FE2 C:402 , OH C:410 , G x:510
binding site for residue ZN C 401
17
AD8
SOFTWARE
ASP C:45 , ASN C:90 , HIS C:180 , HIS C:230 , ZN C:401 , OH C:410 , G x:510
binding site for residue FE2 C 402
18
AD9
SOFTWARE
ARG C:50 , ASN C:95 , HIS C:99 , PRO C:146 , HOH C:505 , HOH C:516 , HOH C:574
binding site for residue SO4 C 403
19
AE1
SOFTWARE
LYS C:320 , TYR C:321 , HOH C:503 , HOH C:515 , TYR D:51 , TYR D:74 , THR D:332
binding site for residue SO4 C 404
20
AE2
SOFTWARE
GLN C:199 , CYS C:233 , GLU C:234 , ASN C:254 , HOH C:598
binding site for residue SO4 C 405
21
AE3
SOFTWARE
LYS C:18 , LYS C:249 , A X:501
binding site for residue SO4 C 406
22
AE4
SOFTWARE
LYS C:189 , GLU C:238 , GLU C:239 , GLY C:240
binding site for residue SO4 C 407
23
AE5
SOFTWARE
ARG C:20 , ARG C:24
binding site for residue SO4 C 408
24
AE6
SOFTWARE
TYR C:74 , HOH C:577 , LYS E:320 , TYR E:321
binding site for residue SO4 C 409
25
AE7
SOFTWARE
CYS C:14 , ASP C:45 , HIS C:180 , HIS C:230 , HIS C:232 , ZN C:401 , FE2 C:402 , G x:510
binding site for residue OH C 410
26
AE8
SOFTWARE
ASP D:45 , ASN D:90 , HIS D:180 , HIS D:230 , ZN D:402 , OH D:408 , G y:510
binding site for residue FE2 D 401
27
AE9
SOFTWARE
CYS D:14 , HIS D:16 , ASP D:45 , HIS D:232 , FE2 D:401 , OH D:408 , G y:510
binding site for residue ZN D 402
28
AF1
SOFTWARE
ARG D:50 , ASN D:95 , HIS D:99 , PRO D:146 , HOH D:517 , HOH D:533 , HOH D:550
binding site for residue SO4 D 403
29
AF2
SOFTWARE
SER D:172 , GLN D:173
binding site for residue SO4 D 404
30
AF3
SOFTWARE
GLN D:163 , SER D:298 , ILE D:299 , SER D:300 , HOH D:590
binding site for residue SO4 D 405
31
AF4
SOFTWARE
GLY D:68 , HIS D:71 , LEU D:72 , HOH D:599
binding site for residue SO4 D 406
32
AF5
SOFTWARE
LYS D:18 , TYR D:64 , LYS D:249 , TYR D:252 , A Y:501
binding site for residue SO4 D 407
33
AF6
SOFTWARE
CYS D:14 , ASP D:45 , HIS D:180 , HIS D:230 , HIS D:232 , FE2 D:401 , ZN D:402 , G y:510
binding site for residue OH D 408
34
AF7
SOFTWARE
ASP E:45 , ASN E:90 , HIS E:180 , HIS E:230 , ZN E:402 , OH E:407 , G z:510
binding site for residue FE2 E 401
35
AF8
SOFTWARE
CYS E:14 , HIS E:16 , ASP E:45 , HIS E:232 , FE2 E:401 , OH E:407 , G z:510
binding site for residue ZN E 402
36
AF9
SOFTWARE
ARG E:50 , ASN E:95 , HIS E:99 , PRO E:146 , HOH E:509 , HOH E:529 , HOH E:545
binding site for residue SO4 E 403
37
AG1
SOFTWARE
LYS E:18 , TYR E:64 , LYS E:249 , TYR E:252 , A Z:501
binding site for residue SO4 E 404
38
AG2
SOFTWARE
GLN E:163 , SER E:298 , ILE E:299 , SER E:300
binding site for residue SO4 E 405
39
AG3
SOFTWARE
LYS B:320 , TYR B:321 , TYR E:51 , TYR E:74 , HOH E:570
binding site for residue SO4 E 406
40
AG4
SOFTWARE
CYS E:14 , ASP E:45 , HIS E:180 , HIS E:230 , HIS E:232 , FE2 E:401 , ZN E:402 , G z:510
binding site for residue OH E 407
41
AG5
SOFTWARE
HIS A:16 , ASP A:45 , GLN A:47 , VAL A:60 , PRO A:61 , TYR A:64 , ASN A:90 , GLY A:201 , PHE A:202 , ASP A:205 , LEU A:209 , HIS A:230 , MET A:231 , HIS A:232 , LYS A:249 , ZN A:401 , FE2 A:402 , SO4 A:404 , OH A:408 , HOH A:529 , HOH A:534 , U v:511 , HOH v:601 , A V:500 , C V:502
binding site for Di-nucleotide G G 510 and A V 501
42
AG6
SOFTWARE
HIS B:16 , ASP B:45 , GLN B:47 , PRO B:61 , LYS B:63 , TYR B:64 , ASN B:90 , GLY B:201 , ASP B:205 , LEU B:209 , HIS B:230 , MET B:231 , HIS B:232 , LYS B:249 , FE2 B:401 , ZN B:402 , SO4 B:404 , OH B:407 , HOH B:549 , U w:511 , A W:500 , C W:502
binding site for Di-nucleotide G H 510 and A W 501
43
AG7
SOFTWARE
HIS C:16 , ASP C:45 , GLN C:47 , VAL C:60 , PRO C:61 , TYR C:64 , ASN C:90 , GLY C:201 , PHE C:202 , ASP C:205 , LEU C:209 , HIS C:230 , MET C:231 , HIS C:232 , LYS C:249 , ZN C:401 , FE2 C:402 , SO4 C:406 , OH C:410 , HOH C:532 , HOH C:592 , U x:511 , HOH x:601 , A X:500 , C X:502
binding site for Di-nucleotide G I 510 and A X 501
44
AG8
SOFTWARE
HIS D:16 , ASP D:45 , GLN D:47 , VAL D:60 , PRO D:61 , TYR D:64 , ASN D:90 , GLY D:201 , PHE D:202 , ASP D:205 , LEU D:209 , HIS D:230 , MET D:231 , HIS D:232 , LYS D:249 , FE2 D:401 , ZN D:402 , SO4 D:407 , OH D:408 , HOH D:523 , U y:511 , A Y:500 , C Y:502
binding site for Di-nucleotide G J 510 and A Y 501
45
AG9
SOFTWARE
HIS E:16 , ASP E:45 , GLN E:47 , VAL E:60 , PRO E:61 , TYR E:64 , ASN E:90 , GLY E:201 , PHE E:202 , ASP E:205 , LEU E:209 , HIS E:230 , MET E:231 , HIS E:232 , LYS E:249 , FE2 E:401 , ZN E:402 , SO4 E:404 , OH E:407 , U z:511 , A Z:500 , C Z:502 , HOH Z:602
binding site for Di-nucleotide G K 510 and A Z 501
[
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asym.Unit (644 KB)
Header - Asym.Unit
Biol.Unit 1 (132 KB)
Header - Biol.Unit 1
Biol.Unit 2 (134 KB)
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Biol.Unit 3 (134 KB)
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Biol.Unit 4 (133 KB)
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Biol.Unit 5 (134 KB)
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