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5JVH
Asym. Unit
Info
Asym.Unit (3.4 MB)
Biol.Unit 1, α-C (3.4 MB)
Biol.Unit 1 (3.4 MB)
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Title
:
THE CRYSTAL STRUCTURE LARGE RIBOSOMAL SUBUNIT (50S) OF DEINOCOCCUS RADIODURANS IN COMPLEX WITH EVERNIMICIN
Authors
:
A. Yonath
Date
:
11 May 16 (Deposition) - 09 Nov 16 (Release) - 09 Nov 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.58
Chains
:
Asym. Unit : A,B,C,D,E,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,1,2,3
Biol. Unit 1: A,B,C,D,E,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,1,2,3 (1x)
Keywords
:
Ribosome, Antibiotics
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Krupkin, I. Wekselman, D. Matzov, Z. Eyal, Y. Diskin Posner, H. Rozenberg, E. Zimmerman, A. Bashan, A. Yonath
Avilamycin And Evernimicin Induce Structural Changes In Rproteins Ul16 And Ctc That Enhance The Inhibition Of A-Sit Trna Binding.
Proc. Natl. Acad. Sci. Usa V. 113 E6796 2016
[
close entry info
]
Hetero Components
(2, 124)
Info
All Hetero Components
1a: EVERNIMICIN (6O1a)
2a: MAGNESIUM ION (MGa)
2aa: MAGNESIUM ION (MGaa)
2ab: MAGNESIUM ION (MGab)
2ac: MAGNESIUM ION (MGac)
2ad: MAGNESIUM ION (MGad)
2ae: MAGNESIUM ION (MGae)
2af: MAGNESIUM ION (MGaf)
2ag: MAGNESIUM ION (MGag)
2ah: MAGNESIUM ION (MGah)
2ai: MAGNESIUM ION (MGai)
2aj: MAGNESIUM ION (MGaj)
2ak: MAGNESIUM ION (MGak)
2al: MAGNESIUM ION (MGal)
2am: MAGNESIUM ION (MGam)
2an: MAGNESIUM ION (MGan)
2ao: MAGNESIUM ION (MGao)
2ap: MAGNESIUM ION (MGap)
2aq: MAGNESIUM ION (MGaq)
2ar: MAGNESIUM ION (MGar)
2as: MAGNESIUM ION (MGas)
2at: MAGNESIUM ION (MGat)
2au: MAGNESIUM ION (MGau)
2av: MAGNESIUM ION (MGav)
2aw: MAGNESIUM ION (MGaw)
2ax: MAGNESIUM ION (MGax)
2ay: MAGNESIUM ION (MGay)
2az: MAGNESIUM ION (MGaz)
2b: MAGNESIUM ION (MGb)
2ba: MAGNESIUM ION (MGba)
2bb: MAGNESIUM ION (MGbb)
2bc: MAGNESIUM ION (MGbc)
2bd: MAGNESIUM ION (MGbd)
2be: MAGNESIUM ION (MGbe)
2bf: MAGNESIUM ION (MGbf)
2bg: MAGNESIUM ION (MGbg)
2bh: MAGNESIUM ION (MGbh)
2bi: MAGNESIUM ION (MGbi)
2bj: MAGNESIUM ION (MGbj)
2bk: MAGNESIUM ION (MGbk)
2bl: MAGNESIUM ION (MGbl)
2bm: MAGNESIUM ION (MGbm)
2bn: MAGNESIUM ION (MGbn)
2bo: MAGNESIUM ION (MGbo)
2bp: MAGNESIUM ION (MGbp)
2bq: MAGNESIUM ION (MGbq)
2br: MAGNESIUM ION (MGbr)
2bs: MAGNESIUM ION (MGbs)
2bt: MAGNESIUM ION (MGbt)
2bu: MAGNESIUM ION (MGbu)
2bv: MAGNESIUM ION (MGbv)
2bw: MAGNESIUM ION (MGbw)
2bx: MAGNESIUM ION (MGbx)
2by: MAGNESIUM ION (MGby)
2bz: MAGNESIUM ION (MGbz)
2c: MAGNESIUM ION (MGc)
2ca: MAGNESIUM ION (MGca)
2cb: MAGNESIUM ION (MGcb)
2cc: MAGNESIUM ION (MGcc)
2cd: MAGNESIUM ION (MGcd)
2ce: MAGNESIUM ION (MGce)
2cf: MAGNESIUM ION (MGcf)
2cg: MAGNESIUM ION (MGcg)
2ch: MAGNESIUM ION (MGch)
2ci: MAGNESIUM ION (MGci)
2cj: MAGNESIUM ION (MGcj)
2ck: MAGNESIUM ION (MGck)
2cl: MAGNESIUM ION (MGcl)
2cm: MAGNESIUM ION (MGcm)
2cn: MAGNESIUM ION (MGcn)
2co: MAGNESIUM ION (MGco)
2cp: MAGNESIUM ION (MGcp)
2cq: MAGNESIUM ION (MGcq)
2cr: MAGNESIUM ION (MGcr)
2cs: MAGNESIUM ION (MGcs)
2ct: MAGNESIUM ION (MGct)
2cu: MAGNESIUM ION (MGcu)
2cv: MAGNESIUM ION (MGcv)
2cw: MAGNESIUM ION (MGcw)
2cx: MAGNESIUM ION (MGcx)
2cy: MAGNESIUM ION (MGcy)
2cz: MAGNESIUM ION (MGcz)
2d: MAGNESIUM ION (MGd)
2da: MAGNESIUM ION (MGda)
2db: MAGNESIUM ION (MGdb)
2dc: MAGNESIUM ION (MGdc)
2dd: MAGNESIUM ION (MGdd)
2de: MAGNESIUM ION (MGde)
2df: MAGNESIUM ION (MGdf)
2dg: MAGNESIUM ION (MGdg)
2dh: MAGNESIUM ION (MGdh)
2di: MAGNESIUM ION (MGdi)
2dj: MAGNESIUM ION (MGdj)
2dk: MAGNESIUM ION (MGdk)
2dl: MAGNESIUM ION (MGdl)
2dm: MAGNESIUM ION (MGdm)
2dn: MAGNESIUM ION (MGdn)
2do: MAGNESIUM ION (MGdo)
2dp: MAGNESIUM ION (MGdp)
2dq: MAGNESIUM ION (MGdq)
2dr: MAGNESIUM ION (MGdr)
2ds: MAGNESIUM ION (MGds)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
2g: MAGNESIUM ION (MGg)
2h: MAGNESIUM ION (MGh)
2i: MAGNESIUM ION (MGi)
2j: MAGNESIUM ION (MGj)
2k: MAGNESIUM ION (MGk)
2l: MAGNESIUM ION (MGl)
2m: MAGNESIUM ION (MGm)
2n: MAGNESIUM ION (MGn)
2o: MAGNESIUM ION (MGo)
2p: MAGNESIUM ION (MGp)
2q: MAGNESIUM ION (MGq)
2r: MAGNESIUM ION (MGr)
2s: MAGNESIUM ION (MGs)
2t: MAGNESIUM ION (MGt)
2u: MAGNESIUM ION (MGu)
2v: MAGNESIUM ION (MGv)
2w: MAGNESIUM ION (MGw)
2x: MAGNESIUM ION (MGx)
2y: MAGNESIUM ION (MGy)
2z: MAGNESIUM ION (MGz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
6O1
1
Ligand/Ion
EVERNIMICIN
2
MG
123
Ligand/Ion
MAGNESIUM ION
[
close Hetero Component info
]
Sites
(111, 111)
Info
All Sites
001: AC1 (SOFTWARE)
002: AC2 (SOFTWARE)
003: AC3 (SOFTWARE)
004: AC4 (SOFTWARE)
005: AC5 (SOFTWARE)
006: AC6 (SOFTWARE)
007: AC7 (SOFTWARE)
008: AC8 (SOFTWARE)
009: AC9 (SOFTWARE)
010: AD1 (SOFTWARE)
011: AD2 (SOFTWARE)
012: AD3 (SOFTWARE)
013: AD4 (SOFTWARE)
014: AD5 (SOFTWARE)
015: AD6 (SOFTWARE)
016: AD7 (SOFTWARE)
017: AD8 (SOFTWARE)
018: AD9 (SOFTWARE)
019: AE1 (SOFTWARE)
020: AE2 (SOFTWARE)
021: AE3 (SOFTWARE)
022: AE4 (SOFTWARE)
023: AE5 (SOFTWARE)
024: AE6 (SOFTWARE)
025: AE7 (SOFTWARE)
026: AE8 (SOFTWARE)
027: AE9 (SOFTWARE)
028: AF1 (SOFTWARE)
029: AF2 (SOFTWARE)
030: AF3 (SOFTWARE)
031: AF4 (SOFTWARE)
032: AF5 (SOFTWARE)
033: AF6 (SOFTWARE)
034: AF7 (SOFTWARE)
035: AF8 (SOFTWARE)
036: AF9 (SOFTWARE)
037: AG1 (SOFTWARE)
038: AG2 (SOFTWARE)
039: AG3 (SOFTWARE)
040: AG4 (SOFTWARE)
041: AG5 (SOFTWARE)
042: AG6 (SOFTWARE)
043: AG7 (SOFTWARE)
044: AG8 (SOFTWARE)
045: AG9 (SOFTWARE)
046: AH1 (SOFTWARE)
047: AH2 (SOFTWARE)
048: AH3 (SOFTWARE)
049: AH4 (SOFTWARE)
050: AH5 (SOFTWARE)
051: AH6 (SOFTWARE)
052: AH7 (SOFTWARE)
053: AH8 (SOFTWARE)
054: AH9 (SOFTWARE)
055: AI1 (SOFTWARE)
056: AI2 (SOFTWARE)
057: AI3 (SOFTWARE)
058: AI4 (SOFTWARE)
059: AI5 (SOFTWARE)
060: AI6 (SOFTWARE)
061: AI7 (SOFTWARE)
062: AI8 (SOFTWARE)
063: AI9 (SOFTWARE)
064: AJ1 (SOFTWARE)
065: AJ2 (SOFTWARE)
066: AJ3 (SOFTWARE)
067: AJ4 (SOFTWARE)
068: AJ5 (SOFTWARE)
069: AJ6 (SOFTWARE)
070: AJ7 (SOFTWARE)
071: AJ8 (SOFTWARE)
072: AJ9 (SOFTWARE)
073: AK1 (SOFTWARE)
074: AK2 (SOFTWARE)
075: AK3 (SOFTWARE)
076: AK4 (SOFTWARE)
077: AK5 (SOFTWARE)
078: AK6 (SOFTWARE)
079: AK7 (SOFTWARE)
080: AK8 (SOFTWARE)
081: AK9 (SOFTWARE)
082: AL1 (SOFTWARE)
083: AL2 (SOFTWARE)
084: AL3 (SOFTWARE)
085: AL4 (SOFTWARE)
086: AL5 (SOFTWARE)
087: AL6 (SOFTWARE)
088: AL7 (SOFTWARE)
089: AL8 (SOFTWARE)
090: AL9 (SOFTWARE)
091: AM1 (SOFTWARE)
092: AM2 (SOFTWARE)
093: AM3 (SOFTWARE)
094: AM4 (SOFTWARE)
095: AM5 (SOFTWARE)
096: AM6 (SOFTWARE)
097: AM7 (SOFTWARE)
098: AM8 (SOFTWARE)
099: AM9 (SOFTWARE)
100: AN1 (SOFTWARE)
101: AN2 (SOFTWARE)
102: AN3 (SOFTWARE)
103: AN4 (SOFTWARE)
104: AN5 (SOFTWARE)
105: AN6 (SOFTWARE)
106: AN7 (SOFTWARE)
107: AN8 (SOFTWARE)
108: AN9 (SOFTWARE)
109: AO1 (SOFTWARE)
110: AO2 (SOFTWARE)
111: AO3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
001
AC1
SOFTWARE
ARG J:52 , ILE J:53 , SER J:56 , ARG J:57 , ARG J:60 , GLU S:179 , A X:2448 , G X:2449 , A X:2450 , A X:2457 , U X:2458 , C X:2459 , G X:2461 , A X:2509 , G X:2514 , G X:2515
binding site for residue 6O1 X 2901
002
AC2
SOFTWARE
G X:2699
binding site for residue MG X 2902
003
AC3
SOFTWARE
C X:583
binding site for residue MG X 2903
004
AC4
SOFTWARE
C X:1765 , A X:1777
binding site for residue MG X 2906
005
AC5
SOFTWARE
G X:844
binding site for residue MG X 2907
006
AC6
SOFTWARE
A X:1693
binding site for residue MG X 2908
007
AC7
SOFTWARE
G X:1337 , U X:1339 , C X:1340
binding site for residue MG X 2909
008
AC8
SOFTWARE
A X:1681 , G X:1975
binding site for residue MG X 2910
009
AC9
SOFTWARE
A X:815
binding site for residue MG X 2911
010
AD1
SOFTWARE
G X:2661 , A X:2701
binding site for residue MG X 2912
011
AD2
SOFTWARE
A X:2684
binding site for residue MG X 2913
012
AD3
SOFTWARE
C X:541 , C X:2019
binding site for residue MG X 2914
013
AD4
SOFTWARE
U X:800 , C X:803
binding site for residue MG X 2915
014
AD5
SOFTWARE
A X:834 , A X:984
binding site for residue MG X 2916
015
AD6
SOFTWARE
U X:753 , A X:1774 , A X:1775
binding site for residue MG X 2917
016
AD7
SOFTWARE
U X:823 , G X:1266
binding site for residue MG X 2918
017
AD8
SOFTWARE
A X:1771 , C X:1773 , A X:1774
binding site for residue MG X 2919
018
AD9
SOFTWARE
G X:2015
binding site for residue MG X 2921
019
AE1
SOFTWARE
U X:2000
binding site for residue MG X 2922
020
AE2
SOFTWARE
C X:1310 , A X:2690 , A X:2692
binding site for residue MG X 2923
021
AE3
SOFTWARE
A X:2690 , A X:2692 , G X:2694
binding site for residue MG X 2924
022
AE4
SOFTWARE
G X:2007 , G X:2018 , G X:2021
binding site for residue MG X 2925
023
AE5
SOFTWARE
A X:763 , A X:764 , A X:1630
binding site for residue MG X 2926
024
AE6
SOFTWARE
U X:835
binding site for residue MG X 2927
025
AE7
SOFTWARE
U X:1467 , A X:1468
binding site for residue MG X 2928
026
AE8
SOFTWARE
A X:576
binding site for residue MG X 2930
027
AE9
SOFTWARE
G X:2036 , G X:2555 , A X:2556
binding site for residue MG X 2931
028
AF1
SOFTWARE
A X:2497 , C X:2519 , A X:2520
binding site for residue MG X 2932
029
AF2
SOFTWARE
G X:2567
binding site for residue MG X 2934
030
AF3
SOFTWARE
U X:2057 , G X:2218
binding site for residue MG X 2936
031
AF4
SOFTWARE
U X:1656
binding site for residue MG X 2937
032
AF5
SOFTWARE
A X:1681 , A X:1682
binding site for residue MG X 2938
033
AF6
SOFTWARE
U X:1280 , A X:1281 , C X:1989 , A X:2031
binding site for residue MG X 2939
034
AF7
SOFTWARE
A X:956
binding site for residue MG X 2941
035
AF8
SOFTWARE
C X:1283 , G X:1284 , A X:1285 , G X:1664 , C X:1665
binding site for residue MG X 2942
036
AF9
SOFTWARE
G X:2039 , A X:2040 , A X:2041
binding site for residue MG X 2943
037
AG1
SOFTWARE
C X:1687 , U X:1688
binding site for residue MG X 2944
038
AG2
SOFTWARE
G X:1887
binding site for residue MG X 2945
039
AG3
SOFTWARE
C X:2486 , C X:2552 , G X:2553 , C X:2554
binding site for residue MG X 2946
040
AG4
SOFTWARE
A X:1282 , A X:1988
binding site for residue MG X 2948
041
AG5
SOFTWARE
U X:1280
binding site for residue MG X 2949
042
AG6
SOFTWARE
G X:2656
binding site for residue MG X 2950
043
AG7
SOFTWARE
U X:585 , A X:2482
binding site for residue MG X 2951
044
AG8
SOFTWARE
C X:169 , A X:176 , U X:2222
binding site for residue MG X 2952
045
AG9
SOFTWARE
G X:2044 , G X:2481
binding site for residue MG X 2953
046
AH1
SOFTWARE
A X:797 , G X:2567
binding site for residue MG X 2954
047
AH2
SOFTWARE
C X:1311 , U X:1656
binding site for residue MG X 2955
048
AH3
SOFTWARE
C X:1653
binding site for residue MG X 2956
049
AH4
SOFTWARE
A X:743 , C X:744 , A X:774 , U X:775 , G X:776
binding site for residue MG X 2957
050
AH5
SOFTWARE
G X:798 , G X:805
binding site for residue MG X 2958
051
AH6
SOFTWARE
U X:2222
binding site for residue MG X 2959
052
AH7
SOFTWARE
U X:2666
binding site for residue MG X 2960
053
AH8
SOFTWARE
A X:2409 , U X:2410 , A X:2411
binding site for residue MG X 2961
054
AH9
SOFTWARE
A X:2025
binding site for residue MG X 2962
055
AI1
SOFTWARE
C X:226
binding site for residue MG X 2963
056
AI2
SOFTWARE
C X:982 , G X:985
binding site for residue MG X 2964
057
AI3
SOFTWARE
G X:1767 , A X:1964
binding site for residue MG X 2965
058
AI4
SOFTWARE
C X:2008
binding site for residue MG X 2966
059
AI5
SOFTWARE
A X:168 , C X:169 , A X:813
binding site for residue MG X 2967
060
AI6
SOFTWARE
G X:2561 , G X:2562 , U X:2563
binding site for residue MG X 2968
061
AI7
SOFTWARE
ALA A:225 , ASN A:227 , A X:796 , A X:797 , A X:2568
binding site for residue MG X 2969
062
AI8
SOFTWARE
C X:830 , G X:1201
binding site for residue MG X 2970
063
AI9
SOFTWARE
G X:2847
binding site for residue MG X 2971
064
AJ1
SOFTWARE
C X:583
binding site for residue MG X 2972
065
AJ2
SOFTWARE
C X:959 , U X:973 , U X:974
binding site for residue MG X 2973
066
AJ3
SOFTWARE
G X:462 , G X:464
binding site for residue MG X 2975
067
AJ4
SOFTWARE
U X:521 , G X:522
binding site for residue MG X 2976
068
AJ5
SOFTWARE
U X:2249
binding site for residue MG X 2977
069
AJ6
SOFTWARE
G X:462 , C X:465
binding site for residue MG X 2978
070
AJ7
SOFTWARE
A X:2618 , G X:2619
binding site for residue MG X 2979
071
AJ8
SOFTWARE
U X:577 , A X:984
binding site for residue MG X 2980
072
AJ9
SOFTWARE
ARG 3:42 , G X:2328
binding site for residue MG X 2981
073
AK1
SOFTWARE
U X:839 , C X:2406 , G X:2407 , G X:2408
binding site for residue MG X 2983
074
AK2
SOFTWARE
U X:974
binding site for residue MG X 2984
075
AK3
SOFTWARE
G X:955 , A X:956 , G X:957
binding site for residue MG X 2985
076
AK4
SOFTWARE
A X:536 , C X:537
binding site for residue MG X 2986
077
AK5
SOFTWARE
G X:699 , C X:700
binding site for residue MG X 2987
078
AK6
SOFTWARE
A X:992
binding site for residue MG X 2988
079
AK7
SOFTWARE
G X:171 , A X:172 , A X:174 , C X:175
binding site for residue MG X 2989
080
AK8
SOFTWARE
U X:2471
binding site for residue MG X 2990
081
AK9
SOFTWARE
G X:1168 , C X:1169
binding site for residue MG X 2991
082
AL1
SOFTWARE
G X:2665 , U X:2666
binding site for residue MG X 2992
083
AL2
SOFTWARE
G X:579 , A X:2427 , C X:2478
binding site for residue MG X 2993
084
AL3
SOFTWARE
A X:2247 , A X:2248 , G X:2250
binding site for residue MG X 2994
085
AL4
SOFTWARE
G X:875
binding site for residue MG X 2995
086
AL5
SOFTWARE
A X:1408 , A X:1619 , C X:1620
binding site for residue MG X 2996
087
AL6
SOFTWARE
A X:1643
binding site for residue MG X 2997
088
AL7
SOFTWARE
G X:754
binding site for residue MG X 2998
089
AL8
SOFTWARE
C X:1327 , C X:1328 , G X:1345
binding site for residue MG X 3000
090
AL9
SOFTWARE
G X:2832
binding site for residue MG X 3002
091
AM1
SOFTWARE
C X:31 , C X:1214 , C X:1252
binding site for residue MG X 3003
092
AM2
SOFTWARE
A X:991 , C X:993
binding site for residue MG X 3004
093
AM3
SOFTWARE
G X:831 , G X:1201
binding site for residue MG X 3005
094
AM4
SOFTWARE
C X:1698
binding site for residue MG X 3006
095
AM5
SOFTWARE
C X:1745
binding site for residue MG X 3007
096
AM6
SOFTWARE
G X:1333
binding site for residue MG X 3008
097
AM7
SOFTWARE
A X:14 , G X:15
binding site for residue MG X 3009
098
AM8
SOFTWARE
U X:1459
binding site for residue MG X 3010
099
AM9
SOFTWARE
A X:1355 , U X:1618
binding site for residue MG X 3011
100
AN1
SOFTWARE
C X:750 , U X:1637 , G X:1638
binding site for residue MG X 3013
101
AN2
SOFTWARE
G X:2426 , A X:2427 , C X:2477 , C X:2478
binding site for residue MG X 3014
102
AN3
SOFTWARE
G X:406
binding site for residue MG X 3015
103
AN4
SOFTWARE
G X:510 , A X:512
binding site for residue MG X 3016
104
AN5
SOFTWARE
HIS A:233 , GLY A:234 , G X:2576 , A X:2577
binding site for residue MG X 3017
105
AN6
SOFTWARE
HIS B:135 , A X:1980
binding site for residue MG X 3018
106
AN7
SOFTWARE
SER O:76 , G X:572
binding site for residue MG X 3019
107
AN8
SOFTWARE
ILE Q:53 , C X:1411
binding site for residue MG X 3020
108
AN9
SOFTWARE
G Y:85
binding site for residue MG Y 201
109
AO1
SOFTWARE
GLY K:4 , A X:2795 , G X:2797
binding site for residue MG K 201
110
AO2
SOFTWARE
LYS B:111 , HIS K:3
binding site for residue MG K 202
111
AO3
SOFTWARE
ASN M:58 , G X:2699
binding site for residue MG M 201
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Label:
Sorry, no Info available
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
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all PFAM domains
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Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Chain M
Chain N
Chain O
Chain P
Chain Q
Chain R
Chain S
Chain T
Chain U
Chain V
Chain W
Chain X
Chain Y
Chain Z
Chain 1
Chain 2
Chain 3
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
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close
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RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (3.4 MB)
Header - Asym.Unit
Biol.Unit 1 (3.4 MB)
Header - Biol.Unit 1
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You can upload any molecular structure file format that is recognized by Jmol,
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(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
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