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5J51
Biol. Unit 2
Info
Asym.Unit (220 KB)
Biol.Unit 1 (108 KB)
Biol.Unit 2 (107 KB)
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(1)
Title
:
STRUCTURE OF TETRAMERIC JACALIN COMPLEXED WITH GAL ALPHA-(1,4) GAL
Authors
:
K. V. Abhinav, K. Sharma, A. Surolia, M. Vijayan
Date
:
01 Apr 16 (Deposition) - 14 Dec 16 (Release) - 14 Dec 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.67
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Plant Lectins, Sugar Binding Protein, Galactose Specific Lectin, Beta-Prism I Fold, Post Translational Proteolysis, T-Antigen Binding Protein, Reducing, Non-Reducing Sugars
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. V. Abhinav, K. Sharma, A. Surolia, M. Vijayan
Effect Of Linkage On The Location Of Reducing And Nonreducing Sugars Bound To Jacalin.
Iubmb Life V. 68 971 2016
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Hetero Components
(3, 20)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1aa: 1,2-ETHANEDIOL (EDOaa)
1ab: 1,2-ETHANEDIOL (EDOab)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
1t: 1,2-ETHANEDIOL (EDOt)
1u: 1,2-ETHANEDIOL (EDOu)
1v: 1,2-ETHANEDIOL (EDOv)
1w: 1,2-ETHANEDIOL (EDOw)
1x: 1,2-ETHANEDIOL (EDOx)
1y: 1,2-ETHANEDIOL (EDOy)
1z: 1,2-ETHANEDIOL (EDOz)
2a: ALPHA D-GALACTOSE (GLAa)
2b: ALPHA D-GALACTOSE (GLAb)
2c: ALPHA D-GALACTOSE (GLAc)
2d: ALPHA D-GALACTOSE (GLAd)
3a: ISOPROPYL ALCOHOL (IPAa)
3b: ISOPROPYL ALCOHOL (IPAb)
3c: ISOPROPYL ALCOHOL (IPAc)
3d: ISOPROPYL ALCOHOL (IPAd)
3e: ISOPROPYL ALCOHOL (IPAe)
3f: ISOPROPYL ALCOHOL (IPAf)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
15
Ligand/Ion
1,2-ETHANEDIOL
2
GLA
4
Ligand/Ion
ALPHA D-GALACTOSE
3
IPA
1
Ligand/Ion
ISOPROPYL ALCOHOL
4
PEG
-1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
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Sites
(22, 22)
Info
All Sites
01: AD1 (SOFTWARE)
02: AD4 (SOFTWARE)
03: AD6 (SOFTWARE)
04: AD7 (SOFTWARE)
05: AE2 (SOFTWARE)
06: AE3 (SOFTWARE)
07: AE4 (SOFTWARE)
08: AE5 (SOFTWARE)
09: AE6 (SOFTWARE)
10: AE7 (SOFTWARE)
11: AE8 (SOFTWARE)
12: AE9 (SOFTWARE)
13: AF1 (SOFTWARE)
14: AF2 (SOFTWARE)
15: AF3 (SOFTWARE)
16: AF4 (SOFTWARE)
17: AF5 (SOFTWARE)
18: AF6 (SOFTWARE)
19: AF7 (SOFTWARE)
20: AF8 (SOFTWARE)
21: AF9 (SOFTWARE)
22: AG1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AD1
SOFTWARE
TYR C:64 , ASN C:110 , GLY C:111 , LEU C:112 , EDO C:201 , SER H:4
binding site for residue EDO C 202
02
AD4
SOFTWARE
ASP C:27 , ASN C:43 , LYS C:45 , PRO C:53 , HOH C:320 , VAL E:40 , EDO E:206
binding site for residue EDO C 205
03
AD6
SOFTWARE
PRO E:53
binding site for residue EDO C 207
04
AD7
SOFTWARE
GLN C:42 , ASN C:43 , GLN E:42 , ASN E:43
binding site for residue EDO C 208
05
AE2
SOFTWARE
ALA A:8 , THR A:10 , ALA E:8 , THR E:10
binding site for residue EDO E 201
06
AE3
SOFTWARE
GLY E:1 , ALA E:3 , SER E:119 , TYR E:126
binding site for residue EDO E 202
07
AE4
SOFTWARE
LYS C:55 , HOH C:303 , GLU E:14 , VAL E:31 , HOH E:303 , HOH E:338
binding site for residue EDO E 203
08
AE5
SOFTWARE
VAL C:40 , HOH C:354 , LEU E:17 , ASP E:27 , ASN E:43 , PRO E:53 , HOH E:335
binding site for residue EDO E 204
09
AE6
SOFTWARE
ARG E:13 , PHE E:60 , HOH E:306 , HOH E:321
binding site for residue EDO E 205
10
AE7
SOFTWARE
ASP C:27 , LYS C:45 , EDO C:205 , HOH C:346 , VAL E:40
binding site for residue EDO E 206
11
AE8
SOFTWARE
PHE E:51 , THR E:52 , HOH E:391 , TYR G:39
binding site for residue EDO E 207
12
AE9
SOFTWARE
ASP A:6 , PHE A:9 , TYR A:39 , LEU E:34 , ASN E:35 , SER E:37 , EDO E:210
binding site for residue EDO E 208
13
AF1
SOFTWARE
GLY E:73 , ASN E:74 , ARG E:82 , SER E:100
binding site for residue EDO E 209
14
AF2
SOFTWARE
PHE C:51 , PRO C:53 , SER E:37 , EDO E:208
binding site for residue EDO E 210
15
AF3
SOFTWARE
SER E:132 , LEU E:133 , HOH E:337 , HOH E:374 , LEU G:133
binding site for residue EDO E 211
16
AF4
SOFTWARE
SER B:4 , TYR E:64 , ASN E:110 , GLY E:111 , LEU E:112 , HOH E:333
binding site for residue IPA E 212
17
AF5
SOFTWARE
ALA C:8 , THR C:10 , ALA G:8 , PHE G:9 , THR G:10 , HOH G:357 , HOH G:374
binding site for residue EDO G 201
18
AF6
SOFTWARE
LYS G:55 , HOH G:324
binding site for residue EDO G 202
19
AF7
SOFTWARE
GLY G:73 , ASN G:74 , ARG G:82 , SER G:100
binding site for residue EDO G 203
20
AF8
SOFTWARE
GLN D:3 , SER D:4 , TYR G:64 , ASN G:110 , GLY G:111
binding site for residue EDO G 204
21
AF9
SOFTWARE
GLY E:1 , SER E:76 , TYR E:78 , GLY E:121 , TYR E:122 , TRP E:123 , ASP E:125 , HOH E:304 , HOH E:340
binding site for Poly-Saccharide residues GLA E 213 through GLA E 214
22
AG1
SOFTWARE
GLY C:1 , TYR C:78 , VAL C:79 , ASP C:125 , HOH C:331 , HOH C:362 , GLY G:1 , SER G:76 , TYR G:78 , GLY G:121 , TYR G:122 , TRP G:123 , ASP G:125 , HOH G:366 , HOH G:371
binding site for Poly-Saccharide residues GLA G 205 through GLA G 206
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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Exons
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SCOP Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (220 KB)
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Biol.Unit 1 (108 KB)
Header - Biol.Unit 1
Biol.Unit 2 (107 KB)
Header - Biol.Unit 2
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